ID A0A5P1EKX1_ASPOF Unreviewed; 1356 AA.
AC A0A5P1EKX1;
DT 26-FEB-2020, integrated into UniProtKB/TrEMBL.
DT 26-FEB-2020, sequence version 1.
DT 27-MAR-2024, entry version 11.
DE RecName: Full=PHD-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=A4U43_C07F37130 {ECO:0000313|EMBL:ONK65439.1};
OS Asparagus officinalis (Garden asparagus).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Asparagales; Asparagaceae;
OC Asparagoideae; Asparagus.
OX NCBI_TaxID=4686 {ECO:0000313|EMBL:ONK65439.1, ECO:0000313|Proteomes:UP000243459};
RN [1] {ECO:0000313|Proteomes:UP000243459}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. DH0086 {ECO:0000313|Proteomes:UP000243459};
RX PubMed=29093472; DOI=10.1038/s41467-017-01064-8;
RA Harkess A., Zhou J., Xu C., Bowers J.E., Van der Hulst R., Ayyampalayam S.,
RA Mercati F., Riccardi P., McKain M.R., Kakrana A., Tang H., Ray J.,
RA Groenendijk J., Arikit S., Mathioni S.M., Nakano M., Shan H.,
RA Telgmann-Rauber A., Kanno A., Yue Z., Chen H., Li W., Chen Y., Xu X.,
RA Zhang Y., Luo S., Chen H., Gao J., Mao Z., Pires J.C., Luo M., Kudrna D.,
RA Wing R.A., Meyers B.C., Yi K., Kong H., Lavrijsen P., Sunseri F.,
RA Falavigna A., Ye Y., Leebens-Mack J.H., Chen G.;
RT "The asparagus genome sheds light on the origin and evolution of a young Y
RT chromosome.";
RL Nat. Commun. 8:1279-1279(2017).
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DR EMBL; CM007387; ONK65439.1; -; Genomic_DNA.
DR EnsemblPlants; ONK65439; ONK65439; A4U43_C07F37130.
DR Gramene; ONK65439; ONK65439; A4U43_C07F37130.
DR OMA; WCKDLES; -.
DR OrthoDB; 1058151at2759; -.
DR Proteomes; UP000243459; Chromosome 7.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd15571; ePHD; 2.
DR CDD; cd15489; PHD_SF; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 4.
DR InterPro; IPR034732; EPHD.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR13793:SF107; PHD FINGER FAMILY PROTEIN; 1.
DR PANTHER; PTHR13793; PHD FINGER PROTEINS; 1.
DR Pfam; PF13831; PHD_2; 2.
DR Pfam; PF13832; zf-HC5HC2H_2; 2.
DR SMART; SM00249; PHD; 4.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 2.
DR PROSITE; PS51805; EPHD; 2.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 2.
PE 4: Predicted;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Methyltransferase {ECO:0000256|ARBA:ARBA00022603};
KW Reference proteome {ECO:0000313|Proteomes:UP000243459};
KW Transferase {ECO:0000256|ARBA:ARBA00022603};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 146..197
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 210..331
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS51805"
FT DOMAIN 951..1000
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 1020..1131
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS51805"
FT REGION 56..102
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 881..923
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1247..1297
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1247..1270
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1274..1288
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1356 AA; 149734 MW; 01E09F687304A373 CRC64;
MEVYFRPITE ADIESLRPRG LLDSLDSCFS IPVLDSSLEL EKKDAIFSGS EVGVSSEVVK
EEEEEEKPME IDSVGGLSTA ETSTLPIPEV KEEDANEDES SSMNWVLGSK HRAILTTLRP
TKKRKLLGSD AGLDQLLILP HSEQGSARCH VCCLGESGGK SNKIISCSSC GALVHKKCYG
ILEAVVEKWV CSWCKHVEET WDDKRGNEGL RPCILCPKEG GALKPVGGDL NNEGKKKFAH
LFCSLWTPHV YVEDTKTMEP VVNIVDVTEM KTKMVCNVCK VKHGVCVRCS SGTCRTAFHP
YCAREARHLM EIWGKFGCDN VELRAFCSKH STSQDVDSVL RTRNVTRTAG DDFLGAKPPS
ATVLPNKPLK LRLSCKVKEE NVTQAEVASS ISSEVIKNEA TTEEDGSSMN LSAENGDMQS
SKNIDFEVNE AENSLSDSPT LIPFVKKLIA QGEYVVGDIA SAIGISPDSL ETALMGEISS
FPSDLRPKIA KWFQGNAYVS AGIRHLKFWN GSAISSGSLA ARVDCPKVAN ASGLDTPDNI
IVPDPENADA HSVKSMLSHK RAKNSNGVLK KDKLVVTSEE KIQPDSNEEL VDEIGQDTVV
HTNDGAKDPA GNISPIVDQS QCKDQDRLKT LIEDACSLPS SGPLVLPPEV EGNLATVEKN
ELSETQHKPE CATESVLSEK LDEDQANEID VPQDGAVKKI RIDGSCSSYI HPYIQERLME
VQKSVLPELE RREYKLNGQV KDRILSSNAS DSCNQDLLSP VCKHVDHVPD HGQFDHLAQV
NKIGMLELSP EDEVEGEMLY LQNKLLDSAS AIKHGFDDLL GRVVQQLPHE LEVLKKHRWD
MVLVNQFLRD VKELKKRGRK ERRHQEAQAV LAAAAAVAAS SSRNPLPRKD GSDEIGFLPQ
SPQNVSGLPG RSGQPLPRSR LKEATRSAII KVSPDKHSGG LQSPEFPKDN ALSCDICRRP
ETLLNRIFVC SSCKVAVHLD CYRKFKDPVG PWKCELCEEM LHSGSPRNQT VENRDRSCLV
IECGLCGGGY GAFRKATNGQ WVHAFCAEWM LESTFRRGQQ NLVDGMDVIS KATDVLTCSI
CQQKFGICSK CSYGHCQVTF HPSCARAAGF YMNVKAVGGR LHHKAYCEKH SVEQRQKADT
QHGAEELKGI KQIRFELEKV RILCERIVKR EKIKRELVLC SHDILASRRD YVAYSALMRS
SLCPPGISSE SATTSIDNRS YSGIIQRSED VTVDSTISGK RIKRSLDVDR KTDESSTSRP
SFKRKAPDRT SYSGKQLPHR TQSVSFRNST DDGEKRFKAK KQAETFHKEI VMTSLQASMQ
NQRLPKGFVY VPVGCLSKEK PVVDDPESHE PEEPGG
//
