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Database: UniProt
Entry: A0A671F335_RHIFE
LinkDB: A0A671F335_RHIFE
Original site: A0A671F335_RHIFE 
ID   A0A671F335_RHIFE        Unreviewed;       182 AA.
AC   A0A671F335;
DT   17-JUN-2020, integrated into UniProtKB/TrEMBL.
DT   17-JUN-2020, sequence version 1.
DT   24-JAN-2024, entry version 18.
DE   RecName: Full=High mobility group protein B1 {ECO:0000256|ARBA:ARBA00023865};
DE   AltName: Full=High mobility group protein 1 {ECO:0000256|ARBA:ARBA00030692};
OS   Rhinolophus ferrumequinum (Greater horseshoe bat).
OC   Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC   Eutheria; Laurasiatheria; Chiroptera; Microchiroptera; Rhinolophidae;
OC   Rhinolophinae; Rhinolophus.
OX   NCBI_TaxID=59479 {ECO:0000313|Ensembl:ENSRFEP00010016982.1, ECO:0000313|Proteomes:UP000472240};
RN   [1] {ECO:0000313|Ensembl:ENSRFEP00010016982.1, ECO:0000313|Proteomes:UP000472240}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=25689317; DOI=10.1146/annurev-animal-090414-014900;
RA   Koepfli K.P., Paten B., O'Brien S.J., Koepfli K.P., Paten B., Antunes A.,
RA   Belov K., Bustamante C., Castoe T.A., Clawson H., Crawford A.J.,
RA   Diekhans M., Distel D., Durbin R., Earl D., Fujita M.K., Gamble T.,
RA   Georges A., Gemmell N., Gilbert M.T., Graves J.M., Green R.E., Hickey G.,
RA   Jarvis E.D., Johnson W., Komissarov A., Korf I., Kuhn R., Larkin D.M.,
RA   Lewin H., Lopez J.V., Ma J., Marques-Bonet T., Miller W., Murphy R.,
RA   Pevzner P., Shapiro B., Steiner C., Tamazian G., Venkatesh B., Wang J.,
RA   Wayne R., Wiley E., Yang H., Zhang G., Haussler D., Ryder O., O'Brien S.J.;
RT   "The Genome 10K Project: a way forward.";
RL   Annu Rev Anim Biosci 3:57-111(2015).
RN   [2] {ECO:0000313|Ensembl:ENSRFEP00010016982.1, ECO:0000313|Proteomes:UP000472240}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=29166127; DOI=10.1146/annurev-animal-022516-022811;
RA   Teeling E.C., Vernes S.C., Davalos L.M., Ray D.A., Gilbert M.T.P.,
RA   Myers E.;
RT   "Bat Biology, Genomes, and the Bat1K Project: To Generate Chromosome-Level
RT   Genomes for All Living Bat Species.";
RL   Annu Rev Anim Biosci 6:23-46(2018).
RN   [3] {ECO:0000313|Ensembl:ENSRFEP00010016982.1, ECO:0000313|Proteomes:UP000472240}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RA   Teeling E., Myers G., Vernes S., Pippel M., Winkler S., Fedrigo O.,
RA   Rhie A., Koren S., Phillippy A., Lewin H., Damas J., Howe K.,
RA   Mountcastle J., Jarvis E.D.;
RT   "G10K-VGP greater horseshoe bat female genome, primary haplotype.";
RL   Submitted (DEC-2018) to the EMBL/GenBank/DDBJ databases.
RN   [4] {ECO:0000313|Ensembl:ENSRFEP00010016982.1}
RP   IDENTIFICATION.
RG   Ensembl;
RL   Submitted (SEP-2023) to UniProtKB.
CC   -!- SUBCELLULAR LOCATION: Chromosome {ECO:0000256|ARBA:ARBA00004286}.
CC       Endoplasmic reticulum-Golgi intermediate compartment
CC       {ECO:0000256|ARBA:ARBA00004399}. Nucleus
CC       {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- SIMILARITY: Belongs to the HMGB family.
CC       {ECO:0000256|ARBA:ARBA00008774}.
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DR   AlphaFoldDB; A0A671F335; -.
DR   Ensembl; ENSRFET00010018520.1; ENSRFEP00010016982.1; ENSRFEG00010011499.1.
DR   GeneTree; ENSGT00950000183120; -.
DR   InParanoid; A0A671F335; -.
DR   OMA; CFSNEER; -.
DR   Proteomes; UP000472240; Chromosome 18.
DR   GO; GO:0005694; C:chromosome; IEA:UniProtKB-SubCell.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-UniRule.
DR   GO; GO:0008301; F:DNA binding, bending; IEA:UniProt.
DR   GO; GO:0006259; P:DNA metabolic process; IEA:UniProt.
DR   GO; GO:0045087; P:innate immune response; IEA:UniProtKB-KW.
DR   CDD; cd21978; HMG-box_HMGB_rpt1; 1.
DR   CDD; cd21979; HMG-box_HMGB_rpt2; 1.
DR   Gene3D; 1.10.30.10; High mobility group box domain; 2.
DR   InterPro; IPR009071; HMG_box_dom.
DR   InterPro; IPR036910; HMG_box_dom_sf.
DR   InterPro; IPR017967; HMG_boxA_CS.
DR   PANTHER; PTHR48112:SF12; HIGH MOBILITY GROUP PROTEIN B1; 1.
DR   PANTHER; PTHR48112; HIGH MOBILITY GROUP PROTEIN DSP1; 1.
DR   Pfam; PF00505; HMG_box; 1.
DR   Pfam; PF09011; HMG_box_2; 1.
DR   PRINTS; PR00886; HIGHMOBLTY12.
DR   SMART; SM00398; HMG; 2.
DR   SUPFAM; SSF47095; HMG-box; 2.
DR   PROSITE; PS00353; HMG_BOX_1; 1.
DR   PROSITE; PS50118; HMG_BOX_2; 2.
PE   3: Inferred from homology;
KW   Autophagy {ECO:0000256|ARBA:ARBA00023006};
KW   Chemotaxis {ECO:0000256|ARBA:ARBA00022500};
KW   Chromosome {ECO:0000256|ARBA:ARBA00022454};
KW   DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW   DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW   DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00267};
KW   Immunity {ECO:0000256|ARBA:ARBA00022859};
KW   Innate immunity {ECO:0000256|ARBA:ARBA00022588};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|PROSITE-
KW   ProRule:PRU00267}; Reference proteome {ECO:0000313|Proteomes:UP000472240}.
FT   DOMAIN          9..79
FT                   /note="HMG box"
FT                   /evidence="ECO:0000259|PROSITE:PS50118"
FT   DOMAIN          95..163
FT                   /note="HMG box"
FT                   /evidence="ECO:0000259|PROSITE:PS50118"
FT   DNA_BIND        9..79
FT                   /note="HMG box"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT   DNA_BIND        95..163
FT                   /note="HMG box"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT   REGION          76..95
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        76..94
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   182 AA;  20772 MW;  0B6477A2055FD80D CRC64;
     MGKGDPKKPR GKMSSYAFFV QTCREEHKKK HPDASVNFSE FSKKCSERWK TMSAKEKGKF
     EDMAKADKAR YEREMKTYIP PKGETKKKFK DPNAPKRPPS AFFLFCSEYR PKIKGEHPGL
     SIGDVAKKLG EMWNNTAADD KQPYEKKAAE LKEKYEKDIA AYRAKGKPDA AKKGVVKAEK
     IP
//
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