ID A0A6A3CSP3_HIBSY Unreviewed; 1278 AA.
AC A0A6A3CSP3;
DT 17-JUN-2020, integrated into UniProtKB/TrEMBL.
DT 17-JUN-2020, sequence version 1.
DT 27-MAR-2024, entry version 13.
DE RecName: Full=Integrase catalytic domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=F3Y22_tig00002793pilonHSYRG00074
GN {ECO:0000313|EMBL:KAE8731597.1};
OS Hibiscus syriacus (Rose of Sharon).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Hibiscus.
OX NCBI_TaxID=106335 {ECO:0000313|EMBL:KAE8731597.1, ECO:0000313|Proteomes:UP000436088};
RN [1] {ECO:0000313|EMBL:KAE8731597.1, ECO:0000313|Proteomes:UP000436088}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Baekdansim {ECO:0000313|Proteomes:UP000436088};
RC TISSUE=Leaf {ECO:0000313|EMBL:KAE8731597.1};
RA Kim Y.-M.;
RT "Draft genome information of white flower Hibiscus syriacus.";
RL Submitted (SEP-2019) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the MLO family. {ECO:0000256|ARBA:ARBA00006574}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KAE8731597.1}.
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DR EMBL; VEPZ02000193; KAE8731597.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A6A3CSP3; -.
DR Proteomes; UP000436088; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0006952; P:defense response; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR GO; GO:0009607; P:response to biotic stimulus; IEA:UniProtKB-KW.
DR CDD; cd09272; RNase_HI_RT_Ty1; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR Gene3D; 4.10.60.10; Zinc finger, CCHC-type; 1.
DR InterPro; IPR043502; DNA/RNA_pol_sf.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR004326; Mlo.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR013103; RVT_2.
DR InterPro; IPR001878; Znf_CCHC.
DR InterPro; IPR036875; Znf_CCHC_sf.
DR PANTHER; PTHR42648; TRANSPOSASE, PUTATIVE-RELATED; 1.
DR PANTHER; PTHR42648:SF11; TRANSPOSON TY4-P GAG-POL POLYPROTEIN; 1.
DR Pfam; PF03094; Mlo; 1.
DR Pfam; PF14223; Retrotran_gag_2; 1.
DR Pfam; PF00665; rve; 1.
DR Pfam; PF07727; RVT_2; 1.
DR Pfam; PF00098; zf-CCHC; 1.
DR SMART; SM00343; ZnF_C2HC; 1.
DR SUPFAM; SSF56672; DNA/RNA polymerases; 1.
DR SUPFAM; SSF57756; Retrovirus zinc finger-like domains; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
DR PROSITE; PS50158; ZF_CCHC; 1.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Pathogenesis-related protein {ECO:0000256|ARBA:ARBA00023265};
KW Plant defense {ECO:0000256|ARBA:ARBA00023265};
KW Reference proteome {ECO:0000313|Proteomes:UP000436088};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00047};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00047}.
FT TRANSMEM 1174..1196
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 1230..1253
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 229..243
FT /note="CCHC-type"
FT /evidence="ECO:0000259|PROSITE:PS50158"
FT DOMAIN 411..571
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 196..226
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 639..694
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 639..663
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 671..694
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1278 AA; 146198 MW; 0041AFF39F8146C4 CRC64;
MTTKFDIEKF NGRNFSLWKL KMKDILRKDD CLATIRERPV DFTDDNKWIE MDGNAMTNFH
LALADEVLSS IEEKKTAKEI CDHLTKLYEA TSLHNKIFLK RKLYTLRMPE STSVTEHLNT
LNTLFSQLTS LSCKIREQER AELLLQSLPD SYDQLIINLT NSNVTSLVFD DVATSILQEE
NRCKNKEDRQ VNLQQAEALT TMRGRSTERD QSSSHKHGRS KSRSKKNLKC YHCGKKGHLK
KDCWSLNKNS NPQGNTVNTS DDGDALCCEA STTVEGGSVY SCNDHALEII GVGTIKLKMY
DGTIKVVRDV RHVKGLKKNL LSYRLLDNNA SKIEARKGIM KLFRGALVVL KGEKIAANLY
MLKGETLVEA EAYVASCSSD SVSLPLCEHC ITSKQHRLKF KTSNSRGKSI LELVHSDVWQ
APVTSLGGAK YFVSFIDDYS RRCWVHPIKK KSEVFSTFKN FKVRVELDSE NKIKCFRTDN
GGEYTSEEFD DFCRKEGIKR QFTVANTLQQ NRVVERMNRT LLERTRAMLR DTCLEKSFWA
EAVNTTCYLV NRAPLTAIEL KTPMEMWTGK PADYSNLHIF GSIVYVMYNS QEISKLDSKS
RKCKFLGYTD GVKGYRLWDP TARKVIISRD VIFVEDKLQR KEDDDSAEKS ETTQIHVEKE
FEEGDSSEAE PTHDEQEPES SEAPTTRQSD RVRRRPNWHS DYIIEGNIAY CLLTEDGEPS
TYQEAINSSD ASLWMMAMQE EIEALHKNNT WDLVPLPQGR KPIGNKWVFK IKRNGDDQVE
RYRARLVVKG YAQKEGIDFN EIFSPVVRLT TVRVVLAMCA TFNLHLEQLD VKTTFLHGNL
EEDIYMLQPE GFEEDKKKNL VCRLNKSLYG LKQATRCWYK RFDSFIMCLG YNRLNADPCA
YFKRSGDNDF VILMLYVDDM LVAGPNKDHI EELKAQLARE FEMKDLGSAN KILGMQIHRD
RSNRKIWLSQ KIYLKKILSL FSMQDCKPIS TPLPINFKLS SSMSPSSEEE MMEMSRVPYA
SAVGNSDYAG DLDKSKSTTG YVFKVAGGAV SWVSKLQSIV ATSTTEAEYV AATQASKEAI
WLKDLLEELG HNQEYVSLFC DSQSALHLAR NPAFHSRTKN IRVHYHFIRE KVKEGTIDMQ
KIHTKDNIAD FMTKAINADK FTWCRSSCGL SETMALLSVA ALIVILLVGT KLQVIITKMA
LRIQDRGEVV RGVPVVEPGD DLFWFNRPRL LLFLINFIIF QVLFATVTIA HFVCQPHPED
ARQRTKRRLR PLHGSFSY
//
