ID   A0CH56_PARTE            Unreviewed;       195 AA.
AC   A0CH56;
DT   28-NOV-2006, integrated into UniProtKB/TrEMBL.
DT   28-NOV-2006, sequence version 1.
DT   27-MAR-2024, entry version 46.
DE   RecName: Full=Nuclear nucleic acid-binding protein C1D {ECO:0000256|RuleBase:RU368003};
GN   ORFNames=GSPATT00007563001 {ECO:0000313|EMBL:CAK70123.1};
OS   Paramecium tetraurelia.
OC   Eukaryota; Sar; Alveolata; Ciliophora; Intramacronucleata;
OC   Oligohymenophorea; Peniculida; Parameciidae; Paramecium.
OX   NCBI_TaxID=5888 {ECO:0000313|EMBL:CAK70123.1, ECO:0000313|Proteomes:UP000000600};
RN   [1] {ECO:0000313|EMBL:CAK70123.1, ECO:0000313|Proteomes:UP000000600}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Stock d4-2 {ECO:0000313|EMBL:CAK70123.1,
RC   ECO:0000313|Proteomes:UP000000600};
RX   PubMed=17086204; DOI=10.1038/nature05230;
RG   Genoscope;
RA   Aury J.-M., Jaillon O., Duret L., Noel B., Jubin C., Porcel B.M.,
RA   Segurens B., Daubin V., Anthouard V., Aiach N., Arnaiz O., Billaut A.,
RA   Beisson J., Blanc I., Bouhouche K., Camara F., Duharcourt S., Guigo R.,
RA   Gogendeau D., Katinka M., Keller A.-M., Kissmehl R., Klotz C., Koll F.,
RA   Le Moue A., Lepere C., Malinsky S., Nowacki M., Nowak J.K., Plattner H.,
RA   Poulain J., Ruiz F., Serrano V., Zagulski M., Dessen P., Betermier M.,
RA   Weissenbach J., Scarpelli C., Schachter V., Sperling L., Meyer E.,
RA   Cohen J., Wincker P.;
RT   "Global trends of whole-genome duplications revealed by the ciliate
RT   Paramecium tetraurelia.";
RL   Nature 444:171-178(2006).
CC   -!- FUNCTION: Plays a role in the recruitment of the exosome to pre-rRNA to
CC       mediate the 3'-5' end processing of the 5.8S rRNA.
CC       {ECO:0000256|RuleBase:RU368003}.
CC   -!- SUBUNIT: Monomer and homodimer. {ECO:0000256|RuleBase:RU368003}.
CC   -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|RuleBase:RU368003}.
CC       Nucleus, nucleolus {ECO:0000256|RuleBase:RU368003}. Nucleus
CC       {ECO:0000256|ARBA:ARBA00004123, ECO:0000256|RuleBase:RU368003}.
CC   -!- SIMILARITY: Belongs to the C1D family. {ECO:0000256|ARBA:ARBA00009154,
CC       ECO:0000256|RuleBase:RU368003}.
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DR   EMBL; CT868074; CAK70123.1; -; Genomic_DNA.
DR   RefSeq; XP_001437520.1; XM_001437483.1.
DR   AlphaFoldDB; A0CH56; -.
DR   STRING; 5888.A0CH56; -.
DR   EnsemblProtists; CAK70123; CAK70123; GSPATT00007563001.
DR   GeneID; 5023305; -.
DR   KEGG; ptm:GSPATT00007563001; -.
DR   eggNOG; ENOG502RT1R; Eukaryota.
DR   HOGENOM; CLU_1464071_0_0_1; -.
DR   InParanoid; A0CH56; -.
DR   OMA; ITEGMSH; -.
DR   Proteomes; UP000000600; Partially assembled WGS sequence.
DR   GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-SubCell.
DR   GO; GO:0000178; C:exosome (RNase complex); IBA:GO_Central.
DR   GO; GO:0005730; C:nucleolus; IBA:GO_Central.
DR   GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0000460; P:maturation of 5.8S rRNA; IBA:GO_Central.
DR   GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR   InterPro; IPR011082; Exosome-assoc_fac/DNA_repair.
DR   InterPro; IPR007146; Sas10/Utp3/C1D.
DR   PANTHER; PTHR15341:SF3; NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D; 1.
DR   PANTHER; PTHR15341; SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR; 1.
DR   Pfam; PF04000; Sas10_Utp3; 1.
PE   3: Inferred from homology;
KW   Cytoplasm {ECO:0000256|RuleBase:RU368003};
KW   DNA-binding {ECO:0000256|RuleBase:RU368003};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242, ECO:0000256|RuleBase:RU368003};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000600};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884, ECO:0000256|RuleBase:RU368003};
KW   rRNA processing {ECO:0000256|ARBA:ARBA00022552,
KW   ECO:0000256|RuleBase:RU368003}.
SQ   SEQUENCE   195 AA;  23033 MW;  9C8A1A2711701969 CRC64;
     MSIQTTLQST QEELTKLQSL IQELSEKGNL DEITEGMSHK DQIELNLNLA YTLSSLYYCK
     MYYNYLAYLK LNSVETSAHP IMNELSRIQE AFQKYLPSQV KQPDQKQMSL DRDAAKRFIQ
     PNLKSLDDNQ NYQHKQKKLI EEDKNNTTRL EQPVDIWKNE KDQQDQNKQK LIRGNLIPQT
     GHLNWKNQIE KLMKK
//