ID A0CQJ2_PARTE Unreviewed; 733 AA.
AC A0CQJ2;
DT 28-NOV-2006, integrated into UniProtKB/TrEMBL.
DT 28-NOV-2006, sequence version 1.
DT 24-JAN-2024, entry version 65.
DE SubName: Full=Chromosome undetermined scaffold_24, whole genome shotgun sequence {ECO:0000313|EMBL:CAK73059.1};
GN ORFNames=GSPATT00009407001 {ECO:0000313|EMBL:CAK73059.1};
OS Paramecium tetraurelia.
OC Eukaryota; Sar; Alveolata; Ciliophora; Intramacronucleata;
OC Oligohymenophorea; Peniculida; Parameciidae; Paramecium.
OX NCBI_TaxID=5888 {ECO:0000313|EMBL:CAK73059.1, ECO:0000313|Proteomes:UP000000600};
RN [1] {ECO:0000313|EMBL:CAK73059.1, ECO:0000313|Proteomes:UP000000600}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Stock d4-2 {ECO:0000313|EMBL:CAK73059.1,
RC ECO:0000313|Proteomes:UP000000600};
RX PubMed=17086204; DOI=10.1038/nature05230;
RG Genoscope;
RA Aury J.-M., Jaillon O., Duret L., Noel B., Jubin C., Porcel B.M.,
RA Segurens B., Daubin V., Anthouard V., Aiach N., Arnaiz O., Billaut A.,
RA Beisson J., Blanc I., Bouhouche K., Camara F., Duharcourt S., Guigo R.,
RA Gogendeau D., Katinka M., Keller A.-M., Kissmehl R., Klotz C., Koll F.,
RA Le Moue A., Lepere C., Malinsky S., Nowacki M., Nowak J.K., Plattner H.,
RA Poulain J., Ruiz F., Serrano V., Zagulski M., Dessen P., Betermier M.,
RA Weissenbach J., Scarpelli C., Schachter V., Sperling L., Meyer E.,
RA Cohen J., Wincker P.;
RT "Global trends of whole-genome duplications revealed by the ciliate
RT Paramecium tetraurelia.";
RL Nature 444:171-178(2006).
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DR EMBL; CT868141; CAK73059.1; -; Genomic_DNA.
DR RefSeq; XP_001440456.1; XM_001440419.1.
DR AlphaFoldDB; A0CQJ2; -.
DR STRING; 5888.A0CQJ2; -.
DR EnsemblProtists; CAK73059; CAK73059; GSPATT00009407001.
DR GeneID; 5026241; -.
DR KEGG; ptm:GSPATT00009407001; -.
DR eggNOG; KOG2206; Eukaryota.
DR eggNOG; KOG4373; Eukaryota.
DR HOGENOM; CLU_383351_0_0_1; -.
DR InParanoid; A0CQJ2; -.
DR Proteomes; UP000000600; Partially assembled WGS sequence.
DR GO; GO:0000176; C:nuclear exosome (RNase complex); IBA:GO_Central.
DR GO; GO:0005730; C:nucleolus; IBA:GO_Central.
DR GO; GO:0000175; F:3'-5'-RNA exonuclease activity; IBA:GO_Central.
DR GO; GO:0003727; F:single-stranded RNA binding; IBA:GO_Central.
DR GO; GO:0000467; P:exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); IBA:GO_Central.
DR GO; GO:0071044; P:histone mRNA catabolic process; IBA:GO_Central.
DR GO; GO:0071040; P:nuclear polyadenylation-dependent antisense transcript catabolic process; IBA:GO_Central.
DR GO; GO:0071039; P:nuclear polyadenylation-dependent CUT catabolic process; IBA:GO_Central.
DR GO; GO:0071035; P:nuclear polyadenylation-dependent rRNA catabolic process; IBA:GO_Central.
DR GO; GO:0071036; P:nuclear polyadenylation-dependent snoRNA catabolic process; IBA:GO_Central.
DR GO; GO:0071037; P:nuclear polyadenylation-dependent snRNA catabolic process; IBA:GO_Central.
DR GO; GO:0071038; P:nuclear polyadenylation-dependent tRNA catabolic process; IBA:GO_Central.
DR GO; GO:0071051; P:polyadenylation-dependent snoRNA 3'-end processing; IBA:GO_Central.
DR CDD; cd06142; RNaseD_exo; 1.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR045092; Rrp6-like.
DR PANTHER; PTHR12124:SF47; EXOSOME COMPONENT 10; 1.
DR PANTHER; PTHR12124; POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED; 1.
DR Pfam; PF01612; DNA_pol_A_exo1; 1.
DR SMART; SM00474; 35EXOc; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000600}.
FT DOMAIN 41..214
FT /note="3'-5' exonuclease"
FT /evidence="ECO:0000259|SMART:SM00474"
SQ SEQUENCE 733 AA; 86993 MW; 8E62B2E9F058D241 CRC64;
MQEQLEDIQV LQKLYSAQGN TPEEIITNFK NQQKQHLSKL FKYISNENEL NQFQLKGSII
GVDIEHTNDI GFDGQISIVQ IKDDEDVYII DVIEIGVDNQ KLINVFKQIF EDDKIIKVFY
AGSTDVLWLK RDFQITIQNF FDIKEVADEC KLSKISLIFL WKQYCDHQVS KSYKTNMQTS
DWAERPLTQE QLIYAAYDCY YLPYLRYVLL EELSKADIKK QSKIQKKFEK AILKDYKKPI
LSNQDLAKII DKEYNLLMQI VAENDDKSPI YSFLKTQPVA VQLVKFIALE IMKIRQDYAI
HHNDPVECLE ENEQVILIAI HIYQRLNIQD IQVYKLTYPD FQNYSNKQFE LTLEYIQKQI
DQDWEVYFKS FCKGLYQSFI FDQNFIKFGL TAIFEALQMS PEPKNNQSQQ KMDQKKQKQT
EFVEKYTRKK PAYGNCKIYT KENFFLCNCD EKKVRWYLKQ GLADLISEDP PTIQLKFDPS
GFKEEGSDKA QYVTIERVNQ CVICGKENEL LKFHIVPVVY KKHIQGKRSY DVVCLCLTCH
HKASALNDKL KATIAEKYNI NVKQNKKETL PDMVKNLIKA VQAYNKKKQN LPKEAYQKFQ
MQFNKQIEQL KSQELFKQIN QFDLNNLKYE ENLININDEQ FLAFISYLKQ NEELFNQNDD
NSDQGKLIVE QLKTEEEIDE FLVFWRDNFL NEMKPQYLNE AWAIDHKFKR TFGDKSQYNP
NYQKQEKQID DQD
//
