ID A0YJP1_LYNSP Unreviewed; 841 AA.
AC A0YJP1;
DT 23-JAN-2007, integrated into UniProtKB/TrEMBL.
DT 23-JAN-2007, sequence version 1.
DT 24-JAN-2024, entry version 83.
DE SubName: Full=Cyclic nucleotide-binding domain (cNMP-BD) protein {ECO:0000313|EMBL:EAW38722.1};
GN ORFNames=L8106_14945 {ECO:0000313|EMBL:EAW38722.1};
OS Lyngbya sp. (strain PCC 8106) (Lyngbya aestuarii (strain CCY9616)).
OC Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae;
OC Oscillatoriales; Oscillatoriaceae; Lyngbya.
OX NCBI_TaxID=313612 {ECO:0000313|EMBL:EAW38722.1, ECO:0000313|Proteomes:UP000000737};
RN [1] {ECO:0000313|EMBL:EAW38722.1, ECO:0000313|Proteomes:UP000000737}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=PCC8106 {ECO:0000313|Proteomes:UP000000737};
RA Stal L., Ferriera S., Johnson J., Kravitz S., Halpern A., Remington K.,
RA Beeson K., Tran B., Rogers Y.-H., Friedman R., Venter J.C.;
RL Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EAW38722.1}.
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DR EMBL; AAVU01000003; EAW38722.1; -; Genomic_DNA.
DR RefSeq; WP_009782697.1; NZ_AAVU01000003.1.
DR AlphaFoldDB; A0YJP1; -.
DR eggNOG; COG0348; Bacteria.
DR eggNOG; COG1221; Bacteria.
DR OMA; WWWPLIL; -.
DR OrthoDB; 9771372at2; -.
DR Proteomes; UP000000737; Unassembled WGS sequence.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0051536; F:iron-sulfur cluster binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00038; CAP_ED; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 2.60.120.10; Jelly Rolls; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR017896; 4Fe4S_Fe-S-bd.
DR InterPro; IPR017900; 4Fe4S_Fe_S_CS.
DR InterPro; IPR000595; cNMP-bd_dom.
DR InterPro; IPR018490; cNMP-bd_dom_sf.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR014710; RmlC-like_jellyroll.
DR InterPro; IPR002078; Sigma_54_int.
DR PANTHER; PTHR30224; ELECTRON TRANSPORT PROTEIN; 1.
DR PANTHER; PTHR30224:SF4; ELECTRON TRANSPORT PROTEIN YCCM-RELATED; 1.
DR Pfam; PF00027; cNMP_binding; 1.
DR Pfam; PF12801; Fer4_5; 2.
DR Pfam; PF00158; Sigma54_activat; 1.
DR SMART; SM00100; cNMP; 1.
DR SUPFAM; SSF54862; 4Fe-4S ferredoxins; 1.
DR SUPFAM; SSF51206; cAMP-binding domain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00198; 4FE4S_FER_1; 1.
DR PROSITE; PS51379; 4FE4S_FER_2; 1.
DR PROSITE; PS50042; CNMP_BINDING_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW Cell membrane {ECO:0000256|ARBA:ARBA00022475};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Iron {ECO:0000256|ARBA:ARBA00023004};
KW Iron-sulfur {ECO:0000256|ARBA:ARBA00023014};
KW Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000000737};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 419..439
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 459..483
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 504..521
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 533..553
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 662..679
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 699..727
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 739..759
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 779..807
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 819..838
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 15..130
FT /note="Cyclic nucleotide-binding"
FT /evidence="ECO:0000259|PROSITE:PS50042"
FT DOMAIN 160..373
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
FT DOMAIN 617..647
FT /note="4Fe-4S ferredoxin-type"
FT /evidence="ECO:0000259|PROSITE:PS51379"
SQ SEQUENCE 841 AA; 95172 MW; FACF83C74FFCED14 CRC64;
MDVQELVTWL QERSALSLLK REILEAIASQ LEHRRVEAQK AIVTEAKSPE GLYILQSGHL
EAQSAQLRSY GLLPGSAINL QELLLNKPVR QTLVTLSECE LWLIKTETFN QLVSQYPEIS
QAFSQQLVEE VEALSSQLVY EQERLLILQP YLVPKARRGI VGRSRYAVRL RSQIKQAAKN
RQSVLIFGEP GLEKDNIAAL IHFGSSERRK PLIKVDCSTL QTSGSELLGR VGGKPGLIEA
LGEGTLIFNN VHDLPPELLP VIINLVATKT YTPVSRQGEP PGSTKTCEAQ IIIVSEKAIS
ELNSIVDNLI KVPPLRIRKA DLEDWVKYYS SLICRAKGVE KVRVTPEALR RLQAYDFPNN
LRELRNLVER AIIQLQGGLE ITEEIIWPSQ TKKKQFRLNL LNTYPRLRHF LRSPWWPDWI
NYGFTLTAFA LIIGVLFFGP QTRSENFALN LFWAWWWPIV LILFPFLGRV WCAVCPFMIY
GEVTQKLSLW LFPRKLKRWP REAAEHWGGW FLFGLFALIL LWEELWDLTN TAYLSACLLL
LITAGAMIFS ALFERRFWCR YLCPIGGMNG MFAKLSMTEL RAQQGTCSAE CTTYQCYKGG
PEKGEGMATN GCPLYSHPAQ LEDNRDCVLC MTCLKACPHR SVELNLRPPG IELWTTHVSR
SYEVALLFLM LGAVFLHHLP ELQTQLNLPW NLLQPQPHLW ISVMVLSLPI FIPLLAHLFI
QGIHLVFLNF KSRSFVELAY GYLPLVLAGN LAHYLRLGLS EGGRILPVAL ATFGLDGEGL
PVLVAHPAVI GFLQGTVLIF GEITAIVLTQ KIARQSFKFL LPQHLAIGIL TVCLWQVIVG
Y
//