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Database: UniProt
Entry: A0YJP1_LYNSP
LinkDB: A0YJP1_LYNSP
Original site: A0YJP1_LYNSP 
ID   A0YJP1_LYNSP            Unreviewed;       841 AA.
AC   A0YJP1;
DT   23-JAN-2007, integrated into UniProtKB/TrEMBL.
DT   23-JAN-2007, sequence version 1.
DT   24-JAN-2024, entry version 83.
DE   SubName: Full=Cyclic nucleotide-binding domain (cNMP-BD) protein {ECO:0000313|EMBL:EAW38722.1};
GN   ORFNames=L8106_14945 {ECO:0000313|EMBL:EAW38722.1};
OS   Lyngbya sp. (strain PCC 8106) (Lyngbya aestuarii (strain CCY9616)).
OC   Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae;
OC   Oscillatoriales; Oscillatoriaceae; Lyngbya.
OX   NCBI_TaxID=313612 {ECO:0000313|EMBL:EAW38722.1, ECO:0000313|Proteomes:UP000000737};
RN   [1] {ECO:0000313|EMBL:EAW38722.1, ECO:0000313|Proteomes:UP000000737}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=PCC8106 {ECO:0000313|Proteomes:UP000000737};
RA   Stal L., Ferriera S., Johnson J., Kravitz S., Halpern A., Remington K.,
RA   Beeson K., Tran B., Rogers Y.-H., Friedman R., Venter J.C.;
RL   Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:EAW38722.1}.
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DR   EMBL; AAVU01000003; EAW38722.1; -; Genomic_DNA.
DR   RefSeq; WP_009782697.1; NZ_AAVU01000003.1.
DR   AlphaFoldDB; A0YJP1; -.
DR   eggNOG; COG0348; Bacteria.
DR   eggNOG; COG1221; Bacteria.
DR   OMA; WWWPLIL; -.
DR   OrthoDB; 9771372at2; -.
DR   Proteomes; UP000000737; Unassembled WGS sequence.
DR   GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR   GO; GO:0005524; F:ATP binding; IEA:InterPro.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0051536; F:iron-sulfur cluster binding; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR   CDD; cd00038; CAP_ED; 1.
DR   Gene3D; 1.10.8.60; -; 1.
DR   Gene3D; 2.60.120.10; Jelly Rolls; 1.
DR   Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR   InterPro; IPR017896; 4Fe4S_Fe-S-bd.
DR   InterPro; IPR017900; 4Fe4S_Fe_S_CS.
DR   InterPro; IPR000595; cNMP-bd_dom.
DR   InterPro; IPR018490; cNMP-bd_dom_sf.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR014710; RmlC-like_jellyroll.
DR   InterPro; IPR002078; Sigma_54_int.
DR   PANTHER; PTHR30224; ELECTRON TRANSPORT PROTEIN; 1.
DR   PANTHER; PTHR30224:SF4; ELECTRON TRANSPORT PROTEIN YCCM-RELATED; 1.
DR   Pfam; PF00027; cNMP_binding; 1.
DR   Pfam; PF12801; Fer4_5; 2.
DR   Pfam; PF00158; Sigma54_activat; 1.
DR   SMART; SM00100; cNMP; 1.
DR   SUPFAM; SSF54862; 4Fe-4S ferredoxins; 1.
DR   SUPFAM; SSF51206; cAMP-binding domain-like; 1.
DR   SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR   PROSITE; PS00198; 4FE4S_FER_1; 1.
DR   PROSITE; PS51379; 4FE4S_FER_2; 1.
DR   PROSITE; PS50042; CNMP_BINDING_3; 1.
DR   PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE   4: Predicted;
KW   Cell membrane {ECO:0000256|ARBA:ARBA00022475};
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Iron {ECO:0000256|ARBA:ARBA00023004};
KW   Iron-sulfur {ECO:0000256|ARBA:ARBA00023014};
KW   Membrane {ECO:0000256|ARBA:ARBA00023136, ECO:0000256|SAM:Phobius};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Reference proteome {ECO:0000313|Proteomes:UP000000737};
KW   Transmembrane {ECO:0000256|SAM:Phobius};
KW   Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT   TRANSMEM        419..439
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        459..483
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        504..521
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        533..553
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        662..679
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        699..727
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        739..759
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        779..807
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   TRANSMEM        819..838
FT                   /note="Helical"
FT                   /evidence="ECO:0000256|SAM:Phobius"
FT   DOMAIN          15..130
FT                   /note="Cyclic nucleotide-binding"
FT                   /evidence="ECO:0000259|PROSITE:PS50042"
FT   DOMAIN          160..373
FT                   /note="Sigma-54 factor interaction"
FT                   /evidence="ECO:0000259|PROSITE:PS50045"
FT   DOMAIN          617..647
FT                   /note="4Fe-4S ferredoxin-type"
FT                   /evidence="ECO:0000259|PROSITE:PS51379"
SQ   SEQUENCE   841 AA;  95172 MW;  FACF83C74FFCED14 CRC64;
     MDVQELVTWL QERSALSLLK REILEAIASQ LEHRRVEAQK AIVTEAKSPE GLYILQSGHL
     EAQSAQLRSY GLLPGSAINL QELLLNKPVR QTLVTLSECE LWLIKTETFN QLVSQYPEIS
     QAFSQQLVEE VEALSSQLVY EQERLLILQP YLVPKARRGI VGRSRYAVRL RSQIKQAAKN
     RQSVLIFGEP GLEKDNIAAL IHFGSSERRK PLIKVDCSTL QTSGSELLGR VGGKPGLIEA
     LGEGTLIFNN VHDLPPELLP VIINLVATKT YTPVSRQGEP PGSTKTCEAQ IIIVSEKAIS
     ELNSIVDNLI KVPPLRIRKA DLEDWVKYYS SLICRAKGVE KVRVTPEALR RLQAYDFPNN
     LRELRNLVER AIIQLQGGLE ITEEIIWPSQ TKKKQFRLNL LNTYPRLRHF LRSPWWPDWI
     NYGFTLTAFA LIIGVLFFGP QTRSENFALN LFWAWWWPIV LILFPFLGRV WCAVCPFMIY
     GEVTQKLSLW LFPRKLKRWP REAAEHWGGW FLFGLFALIL LWEELWDLTN TAYLSACLLL
     LITAGAMIFS ALFERRFWCR YLCPIGGMNG MFAKLSMTEL RAQQGTCSAE CTTYQCYKGG
     PEKGEGMATN GCPLYSHPAQ LEDNRDCVLC MTCLKACPHR SVELNLRPPG IELWTTHVSR
     SYEVALLFLM LGAVFLHHLP ELQTQLNLPW NLLQPQPHLW ISVMVLSLPI FIPLLAHLFI
     QGIHLVFLNF KSRSFVELAY GYLPLVLAGN LAHYLRLGLS EGGRILPVAL ATFGLDGEGL
     PVLVAHPAVI GFLQGTVLIF GEITAIVLTQ KIARQSFKFL LPQHLAIGIL TVCLWQVIVG
     Y
//
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