ID A1B9Y4_PARDP Unreviewed; 602 AA.
AC A1B9Y4;
DT 23-JAN-2007, integrated into UniProtKB/TrEMBL.
DT 23-JAN-2007, sequence version 1.
DT 27-MAR-2024, entry version 127.
DE SubName: Full=GAF modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ABL72328.1};
GN OrderedLocusNames=Pden_4264 {ECO:0000313|EMBL:ABL72328.1};
OS Paracoccus denitrificans (strain Pd 1222).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Paracoccaceae; Paracoccus.
OX NCBI_TaxID=318586 {ECO:0000313|EMBL:ABL72328.1, ECO:0000313|Proteomes:UP000000361};
RN [1] {ECO:0000313|Proteomes:UP000000361}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Pd 1222 {ECO:0000313|Proteomes:UP000000361};
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J.,
RA Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Spiro S.,
RA Richardson D.J., Moir J.W.B., Ferguson S.J., van Spanning R.J.M.,
RA Richardson P.;
RT "Complete sequence of chromosome 2 of Paracoccus denitrificans PD1222.";
RL Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP000490; ABL72328.1; -; Genomic_DNA.
DR AlphaFoldDB; A1B9Y4; -.
DR STRING; 318586.Pden_4264; -.
DR EnsemblBacteria; ABL72328; ABL72328; Pden_4264.
DR KEGG; pde:Pden_4264; -.
DR eggNOG; COG3284; Bacteria.
DR HOGENOM; CLU_000445_8_12_5; -.
DR Proteomes; UP000000361; Chromosome 2.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0000160; P:phosphorelay signal transduction system; IEA:UniProtKB-KW.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR PANTHER; PTHR32071:SF95; TRANSCRIPTIONAL REGULATORY PROTEIN ZRAR; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF14532; Sigma54_activ_2; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000000361};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Two-component regulatory system {ECO:0000256|ARBA:ARBA00023012}.
FT DOMAIN 319..526
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 602 AA; 64948 MW; 55ECB4C3869D3280 CRC64;
MMAESIQKED WERFRALGSV PPSVREVVLR SWVRSKEGAR LHALRQAPSL GQDELNNLRS
RNTRLREAAK LAVRRTGYML DDAGAMLLLC DQKGVVLEAA GDARVLSRGA ENHLQPGGRW
DEAAIGTNAI GTALHLGKPV SITGVEHFCE AIHHWSCAAA PIHDPVTGKM LGVVDISAPA
QERMRRGAAL SVSLALQIEE ALRALELQER EALIGHLLSS GMGAGRGGDM AVFDRYGRQV
WASGASERLS TKLGPATAGL AEAPAFEGDP HLLAERFSAA LPEAGVDLIL SRGEALGLVV
SFPIRRRGER KDRIDLPAIA GIGSMMAPIC DEAAKLVESG VPLVIKGQAG SGKETLARAL
HEAGPQARMP LELVDCSLLE PAMLRGAPGG EWLARLSDGG GTLILDEPVE TPLPVQVALA
QSLAQLQRAA PVQVISLSSV PLSERLAAER LRADLHFRLS GAVLRLPSLA ERRADLPDLV
RHFSETCSDR RKGVVRFTPA AMLRLQAYDW PGNLRELRNL VEALSATSFS RLVDAADLPP
AIARGRRPGR EETLRDRERV EILDAVAACG GNMTETARRL GISRSTLYLK LEQYGVPRAR
KH
//
