ID A1VJW1_POLNA Unreviewed; 653 AA.
AC A1VJW1;
DT 06-FEB-2007, integrated into UniProtKB/TrEMBL.
DT 06-FEB-2007, sequence version 1.
DT 27-MAR-2024, entry version 101.
DE SubName: Full=GAF modulated sigma54 specific transcriptional regulator, Fis family {ECO:0000313|EMBL:ABM35939.1};
GN OrderedLocusNames=Pnap_0620 {ECO:0000313|EMBL:ABM35939.1};
OS Polaromonas naphthalenivorans (strain CJ2).
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Comamonadaceae; Polaromonas.
OX NCBI_TaxID=365044 {ECO:0000313|EMBL:ABM35939.1, ECO:0000313|Proteomes:UP000000644};
RN [1] {ECO:0000313|Proteomes:UP000000644}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CJ2 {ECO:0000313|Proteomes:UP000000644};
RX PubMed=19453698; DOI=10.1111/j.1462-2920.2009.01947.x;
RA Yagi J.M., Sims D., Brettin T., Bruce D., Madsen E.L.;
RT "The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal
RT tar-contaminated sediment, reveals physiological and metabolic versatility
RT and evolution through extensive horizontal gene transfer.";
RL Environ. Microbiol. 11:2253-2270(2009).
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DR EMBL; CP000529; ABM35939.1; -; Genomic_DNA.
DR RefSeq; WP_011800039.1; NC_008781.1.
DR AlphaFoldDB; A1VJW1; -.
DR STRING; 365044.Pnap_0620; -.
DR KEGG; pna:Pnap_0620; -.
DR eggNOG; COG3284; Bacteria.
DR HOGENOM; CLU_000445_8_12_4; -.
DR OrthoDB; 9761705at2; -.
DR Proteomes; UP000000644; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR PANTHER; PTHR32071:SF77; TRANSCRIPTIONAL REGULATORY PROTEIN GLRR; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000000644};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 334..563
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
SQ SEQUENCE 653 AA; 70641 MW; AF997B41141BF721 CRC64;
MQTYQREHID RVMQTVAGGS AGTPDAAGDS LIHDSWRRCA RDYRLDPTRM QDAIILPSHR
LREHQDRMDE FLQIARSGMQ ALYQHVAGLG YVVLLTDARG VTVDFLGDLN SDHSLRRAGL
YLGSDWSEPL AGTCGVGTCI STGQALTVHQ GDHFDATHIP LTCTTAPVFD GRGQLNAVLD
ISALRSPQSK ESQHMALQMV QIYAHHIENA SFLRQFRHDW VLRLSPSPQF LEVNPDYLLA
LDAAGRVIGH NRRAQLLLQD CVAGPLIGAA FERLFNARLG DLGRFLHSCP ADRRAITLAG
SSQLLFLLAS PAPAAARPAP SAAVEPVPAP LAALCGGDAA LARQIARAAR FVNSPIGLLL
TGETGSGKEF FAKALHASGE RRGRPFVAVN CAAIPEALAE SELFGYLPGS FSGAGSRAKR
GLVQEADGGT LFLDEIGDMT LALQARLLRV LAEREVLPVG ATRPVPVNIR VMAATHCDLE
ALVREGRFRA DLYYRLNGAH LVLPPLRERT DLGWLIARML ANPRDGSDTA PLALSLDARA
RLLAHRWPGN LRELHNVIEY ARSLCSHGVI ELDDLPDHLA AAPRLPASAS AEPAAPAPAL
ASEAAQLLQH LSATHWNVAE AARRMGLSRM TLYRRMQRWG IASPNQRDGG AAG
//
