ID A1VQS9_POLNA Unreviewed; 284 AA.
AC A1VQS9;
DT 06-FEB-2007, integrated into UniProtKB/TrEMBL.
DT 06-FEB-2007, sequence version 1.
DT 27-MAR-2024, entry version 89.
DE SubName: Full=Regulatory protein, IclR {ECO:0000313|EMBL:ABM38007.1};
GN OrderedLocusNames=Pnap_2705 {ECO:0000313|EMBL:ABM38007.1};
OS Polaromonas naphthalenivorans (strain CJ2).
OC Bacteria; Pseudomonadota; Betaproteobacteria; Burkholderiales;
OC Comamonadaceae; Polaromonas.
OX NCBI_TaxID=365044 {ECO:0000313|EMBL:ABM38007.1, ECO:0000313|Proteomes:UP000000644};
RN [1] {ECO:0000313|Proteomes:UP000000644}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CJ2 {ECO:0000313|Proteomes:UP000000644};
RX PubMed=19453698; DOI=10.1111/j.1462-2920.2009.01947.x;
RA Yagi J.M., Sims D., Brettin T., Bruce D., Madsen E.L.;
RT "The genome of Polaromonas naphthalenivorans strain CJ2, isolated from coal
RT tar-contaminated sediment, reveals physiological and metabolic versatility
RT and evolution through extensive horizontal gene transfer.";
RL Environ. Microbiol. 11:2253-2270(2009).
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DR EMBL; CP000529; ABM38007.1; -; Genomic_DNA.
DR RefSeq; WP_011802084.1; NC_008781.1.
DR AlphaFoldDB; A1VQS9; -.
DR STRING; 365044.Pnap_2705; -.
DR KEGG; pna:Pnap_2705; -.
DR eggNOG; COG1414; Bacteria.
DR HOGENOM; CLU_062618_6_1_4; -.
DR OrthoDB; 9807558at2; -.
DR Proteomes; UP000000644; Chromosome.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00090; HTH_ARSR; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR011991; ArsR-like_HTH.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR014757; Tscrpt_reg_IclR_C.
DR InterPro; IPR005471; Tscrpt_reg_IclR_N.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR InterPro; IPR036390; WH_DNA-bd_sf.
DR PANTHER; PTHR30136; HELIX-TURN-HELIX TRANSCRIPTIONAL REGULATOR, ICLR FAMILY; 1.
DR PANTHER; PTHR30136:SF35; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF09339; HTH_IclR; 1.
DR Pfam; PF01614; IclR; 1.
DR SMART; SM00346; HTH_ICLR; 1.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF46785; Winged helix' DNA-binding domain; 1.
DR PROSITE; PS51077; HTH_ICLR; 1.
DR PROSITE; PS51078; ICLR_ED; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000644};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 2..64
FT /note="HTH iclR-type"
FT /evidence="ECO:0000259|PROSITE:PS51077"
FT DOMAIN 65..252
FT /note="IclR-ED"
FT /evidence="ECO:0000259|PROSITE:PS51078"
SQ SEQUENCE 284 AA; 29932 MW; DDCD388E010CC704 CRC64;
MNGVLERTLG ILELLAQHGE GMEMAAIADQ LDIPRSAVHR LLADLARCGY VRQTRDHGDY
LLTTKLVSMG LSFLSKSGIV DIAQPLLDRL AEISGELVRL SVVDGNRLTW VARAQGARQG
LRYDPDMGSD AQLSCSSSGH AWLSALSDDD ALALVAQQGL GNPQEFGPNA PASLQAVMDA
VRETRERGFS LTEETYTAGL NAMAAPVQLA GQPPMGIISI AGPTVRFTRE RMLALGPDLL
SLAAQLAAAS SASPFFTKSA ARLADTASTA SLNGTGGLKR IYAA
//
