ID A2XCS4_ORYSI Unreviewed; 959 AA.
AC A2XCS4;
DT 20-MAR-2007, integrated into UniProtKB/TrEMBL.
DT 20-MAR-2007, sequence version 1.
DT 27-MAR-2024, entry version 73.
DE RecName: Full=RNA helicase {ECO:0000256|ARBA:ARBA00012552};
DE EC=3.6.4.13 {ECO:0000256|ARBA:ARBA00012552};
GN ORFNames=OsI_10111 {ECO:0000313|EMBL:EAY88634.1};
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAY88634.1, ECO:0000313|Proteomes:UP000007015};
RN [1] {ECO:0000313|EMBL:EAY88634.1, ECO:0000313|Proteomes:UP000007015}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015};
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J.,
RA Samudrala R., Wang J., Wong G.K., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- SIMILARITY: Belongs to the DNA2/NAM7 helicase family. SDE3 subfamily.
CC {ECO:0000256|ARBA:ARBA00005601}.
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DR EMBL; CM000128; EAY88634.1; -; Genomic_DNA.
DR AlphaFoldDB; A2XCS4; -.
DR STRING; 39946.A2XCS4; -.
DR EnsemblPlants; BGIOSGA011410-TA; BGIOSGA011410-PA; BGIOSGA011410.
DR Gramene; BGIOSGA011410-TA; BGIOSGA011410-PA; BGIOSGA011410.
DR HOGENOM; CLU_001666_6_3_1; -.
DR OMA; FMDYQND; -.
DR Proteomes; UP000007015; Chromosome 3.
DR GO; GO:0005737; C:cytoplasm; IEA:UniProtKB-KW.
DR GO; GO:0032574; F:5'-3' RNA helicase activity; IEA:InterPro.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0009616; P:RNAi-mediated antiviral immune response; IEA:EnsemblPlants.
DR CDD; cd18038; DEXXQc_Helz-like; 1.
DR CDD; cd18808; SF1_C_Upf1; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR InterPro; IPR045055; DNA2/NAM7-like.
DR InterPro; IPR041679; DNA2/NAM7-like_C.
DR InterPro; IPR041677; DNA2/NAM7_AAA_11.
DR InterPro; IPR049080; MOV-10-like_beta-barrel.
DR InterPro; IPR026122; MOV-10/SDE3_DEXXQ/H-box.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047187; SF1_C_Upf1.
DR PANTHER; PTHR10887; DNA2/NAM7 HELICASE FAMILY; 1.
DR PANTHER; PTHR10887:SF322; RNA HELICASE MOV10L1; 1.
DR Pfam; PF13086; AAA_11; 2.
DR Pfam; PF13087; AAA_12; 1.
DR Pfam; PF21634; MOV-10_beta-barrel; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
PE 3: Inferred from homology;
KW Cytoplasm {ECO:0000256|ARBA:ARBA00022490};
KW Reference proteome {ECO:0000313|Proteomes:UP000007015}.
FT DOMAIN 267..348
FT /note="Helicase MOV-10-like beta-barrel"
FT /evidence="ECO:0000259|Pfam:PF21634"
FT DOMAIN 394..479
FT /note="DNA2/NAM7 helicase helicase"
FT /evidence="ECO:0000259|Pfam:PF13086"
FT DOMAIN 509..580
FT /note="DNA2/NAM7 helicase helicase"
FT /evidence="ECO:0000259|Pfam:PF13086"
FT DOMAIN 595..794
FT /note="DNA2/NAM7 helicase-like C-terminal"
FT /evidence="ECO:0000259|Pfam:PF13087"
FT REGION 818..926
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 829..858
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 903..919
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 959 AA; 108638 MW; 315A6DD29FB38BEE CRC64;
MGTYVRNYSD DEFSVAGEKP DVEFMDYQND GSIQDYSLED APVVVTVPFP FIDGKPKSVL
VGETSADTIS IENTSSEPVN LWSVRIFSSN PEDSYVLSMM KPPLNDTDEE AKRNFLGLTS
VEDRTLQPGQ TLTIWLSCTP KDIGLHTSIV HVDIGDEKIE RVAFLLADDN VSQALFSDKP
YSRKHTQKKK FECSSFVPGC RPTRQHSQGF KFKLPQFAIP ADIRELIQSK QRPDVLSEEL
NMTNYAKFFS TLLVMEEINL EEEMRSYDME RILMRRRGLE FLSLEVPGLA EKRPSLVHGD
FIVVRHAGSD ARPYQGFIHK VEADEIFLKF DNQFHLAHRD RNQYDVSFTY NRLNMRRLYK
AIHEAELLGP DILFPCRSSS GSVKKGLFKP LNPHINTEQA DAVATILGCR GVAPYVIYGP
PGTGKTMTLV ESILQLYTAK RRANVLICAA SNSAADHVLA KLLQASYLIR PSDIFRLNAA
SRQYEDVDPD FIRFCFFQDM VFKCPPLQAL LRYKIVISTY MSSSMLQSEG IRRGHFTHIF
LDEAGQASEP EAMVPLSGLC GRDTVVVLAG DPMQLGPVVY CKQAEKDGLG KSYLQRLLFE
YEQYSTGDPN YVTKLVRNYR CHPAILELPS ELFYGGELIA CKEDEVSSIY DSIDLPNKSF
PVLFVGIQGC DEREGNNPSW FNRIEASKVV NIIRNLTRGG DVREADIGVI TPYRQQVVKI
KKALETFEMP DLKVGSVEQF QGQEREIIII STVRSTVKHN EFDKFFNLGF LSNHRRFNVA
ITRAKSLLII IGNPHIITKD RHWDRLLRYC ADNGSYQGCP LPPPEETQVS GFRDSQDEPA
RWGYNQQQES SANYSYKQDP HDSDSEHVNG LPSTENEVEW SEKTLNEEHQ PCSSAAEADS
PEFMLKQKAE EEEHVEQDGV QPEQCPAKDN KLQDAYAAKY SFPPEWCDVS NIPATGWDD
//
