ID A2YFR5_ORYSI Unreviewed; 1079 AA.
AC A2YFR5;
DT 20-MAR-2007, integrated into UniProtKB/TrEMBL.
DT 20-MAR-2007, sequence version 1.
DT 08-NOV-2023, entry version 64.
DE RecName: Full=USP domain-containing protein {ECO:0000259|PROSITE:PS50235};
GN ORFNames=OsI_23952 {ECO:0000313|EMBL:EAZ01926.1};
OS Oryza sativa subsp. indica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39946 {ECO:0000313|EMBL:EAZ01926.1, ECO:0000313|Proteomes:UP000007015};
RN [1] {ECO:0000313|EMBL:EAZ01926.1, ECO:0000313|Proteomes:UP000007015}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015};
RX PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H., Cong L.,
RA Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J., Wang J.,
RA Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X., Wang J., Wang X.,
RA Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y., Zhang Z., Bao J., Han Y.,
RA Dong L., Ji J., Chen P., Wu S., Liu J., Xiao Y., Bu D., Tan J., Yang L.,
RA Ye C., Zhang J., Xu J., Zhou Y., Yu Y., Zhang B., Zhuang S., Wei H.,
RA Liu B., Lei M., Yu H., Li Y., Xu H., Wei S., He X., Fang L., Zhang Z.,
RA Zhang Y., Huang X., Su Z., Tong W., Li J., Tong Z., Li S., Ye J., Wang L.,
RA Fang L., Lei T., Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J.,
RA Samudrala R., Wang J., Wong G.K., Yang H.;
RT "The genomes of Oryza sativa: a history of duplications.";
RL PLoS Biol. 3:266-281(2005).
CC -!- SIMILARITY: Belongs to the peptidase C19 family.
CC {ECO:0000256|ARBA:ARBA00009085}.
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DR EMBL; CM000131; EAZ01926.1; -; Genomic_DNA.
DR AlphaFoldDB; A2YFR5; -.
DR STRING; 39946.A2YFR5; -.
DR EnsemblPlants; BGIOSGA020761-TA; BGIOSGA020761-PA; BGIOSGA020761.
DR Gramene; BGIOSGA020761-TA; BGIOSGA020761-PA; BGIOSGA020761.
DR HOGENOM; CLU_310015_0_0_1; -.
DR OMA; IFPYDEF; -.
DR Proteomes; UP000007015; Chromosome 6.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0004843; F:cysteine-type deubiquitinase activity; IEA:InterPro.
DR CDD; cd02661; Peptidase_C19E; 1.
DR Gene3D; 3.90.70.10; Cysteine proteinases; 1.
DR InterPro; IPR038765; Papain-like_cys_pep_sf.
DR InterPro; IPR001394; Peptidase_C19_UCH.
DR InterPro; IPR018200; USP_CS.
DR InterPro; IPR028889; USP_dom.
DR PANTHER; PTHR24006; UBIQUITIN CARBOXYL-TERMINAL HYDROLASE; 1.
DR PANTHER; PTHR24006:SF677; UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 18; 1.
DR Pfam; PF00443; UCH; 1.
DR SUPFAM; SSF54001; Cysteine proteinases; 1.
DR PROSITE; PS00972; USP_1; 1.
DR PROSITE; PS50235; USP_3; 1.
PE 3: Inferred from homology;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000007015};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 24..43
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 124..147
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 214..521
FT /note="USP"
FT /evidence="ECO:0000259|PROSITE:PS50235"
FT REGION 69..95
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 891..922
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1022..1047
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1079 AA; 117085 MW; 7C2ABDDEE18D1D39 CRC64;
MLGGGLGGGG GGGGAGGLGL DLSAVIQAAV VGLVLFSAAV VAVRRAASRY FVVDAAGFAA
SSYDDHHHPH HHLVMTPRGE EQQRQQGGGA AQGAQAAASG GGEPCAACGY IATKKCSGCK
RVRYWCVPFL LLLLFFSRMS VKALAIWSQV QVQTNEKISP ADKLSGGGDE DRNKLSGFGP
ISLVPARRKL NKVIFPYDEF LKLCNWRDLD YLPCGLLNCG NSCFANVVLQ CLSCTRPLAA
YLLGMDHSRE CYKRHEDWCF LCELQCHIQR ASESMHPFAP KNILSHLPNI GGNLGFGRQE
DAHEFMRFAI DKMQSACLDE FGGEKAVDPS TQETTLIQHI FGGRLQSQVQ CTACGMVSNR
YENMMDLTVE IHGDADSLEE CLDKFTAVEW LDGDNKYKCD GCSDYVKAQK RLTVYQAPNI
LTITLKRFQS GRFGKLNKRV TFPMKLDLTP YMSSTDGSDQ YDLYAVVVHL DMLNASFFGH
YICYIKNYRG RWYKIDDCKV MAVDEEEVHA QGAYMLLYSR RTARPRPLIA VEELMKQQQQ
LKVCPLNGQN HLIQEDVPLE GVPSLKPSED LEVDFESNNK SLHTMDREPD LDFHVSFDRD
KFTNNDIMHP PVSTVSHALD ENTRGDSGFP LEESNTMGSV QFGNSTYETS LVHSPAEQCE
EPASCIDSVD YMEIDTEAGV KVERWSRPAL GDSVGVMGNG TLVPALENGL AGKPIPGFPD
KPSRINSFFA EGCQTGDNGA GSSQELNGHC NGEPSCPEQG VLTNGGNTPS PSTQCYENKF
ATSTNGNYSI GNGDTLSSSN SLHAGKQNAG FTYNGFNPKP YKEPSGSNTY LNNTCNGKPS
EDNHNKCAPN LPAKDCQGGM PFLHRGFLLR PCSRGNPGKC DDGLSISNGT SSSFVSSNSK
SSNISSSRNG EGGTPFLSPS FRTNHCRESA AMDTSASSVH DLKTSYNISL EQKSIGAAVP
SVLIKESWGE DGTTFGTVYQ QRATSVDNVS SRHDENGHVI LGANNSSYGG ENGSNNGILD
MNSSSSQRDA ASSTMMASEK GIGPKTADQV NYISDALEHD GLRRRLTSNF PDQNGIDAQ
//
