GenomeNet

Database: UniProt
Entry: A2YV85
LinkDB: A2YV85
Original site: A2YV85 
ID   RH29_ORYSI              Reviewed;         851 AA.
AC   A2YV85; Q0J5P3; Q68Q05; Q6ZA73;
DT   11-SEP-2007, integrated into UniProtKB/Swiss-Prot.
DT   11-SEP-2007, sequence version 2.
DT   31-JUL-2019, entry version 65.
DE   RecName: Full=DEAD-box ATP-dependent RNA helicase 29;
DE            Short=RNAH;
DE            EC=3.6.4.13;
GN   ORFNames=OsI_028228;
OS   Oryza sativa subsp. indica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39946;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [MRNA].
RC   STRAIN=cv. IR36; TISSUE=Anther;
RA   Yau C.P., Zhuang C.X., Zee S.Y., Yip W.K.;
RT   "Isolation of anther-specific genes during early pollen development in
RT   rice.";
RL   Submitted (JUN-2004) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. 93-11;
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
RA   Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
RA   Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
RA   Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
RA   Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
RA   Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
RA   Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
RA   Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
RA   Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
RA   Chen C.-S., Chen H.-C., Xu Z., Li H., Huang H., Zhang F., Xu H.,
RA   Li N., Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA   Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA   Zheng W., Hao B., Liu S.-M., Wang W., Yuan L., Cao M., McDermott J.,
RA   Samudrala R., Wang J., Wong G.K.-S., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=ATP + H2O = ADP + H(+) + phosphate; Xref=Rhea:RHEA:13065,
CC         ChEBI:CHEBI:15377, ChEBI:CHEBI:15378, ChEBI:CHEBI:30616,
CC         ChEBI:CHEBI:43474, ChEBI:CHEBI:456216; EC=3.6.4.13;
CC   -!- DOMAIN: The Q motif is unique to and characteristic of the DEAD
CC       box family of RNA helicases and controls ATP binding and
CC       hydrolysis.
CC   -!- SIMILARITY: Belongs to the DEAD box helicase family. DDX54/DBP10
CC       subfamily. {ECO:0000305}.
CC   -!- SEQUENCE CAUTION:
CC       Sequence=AAU01909.1; Type=Erroneous initiation; Evidence={ECO:0000305};
DR   EMBL; AY644647; AAU01909.1; ALT_INIT; mRNA.
DR   EMBL; CM000133; -; NOT_ANNOTATED_CDS; Genomic_DNA.
DR   SMR; A2YV85; -.
DR   PRIDE; A2YV85; -.
DR   eggNOG; KOG0337; Eukaryota.
DR   eggNOG; ENOG410XQE5; LUCA.
DR   HOGENOM; HOG000246455; -.
DR   Proteomes; UP000007015; Chromosome 8.
DR   GO; GO:0005634; C:nucleus; IEA:InterPro.
DR   GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR   GO; GO:0003723; F:RNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003724; F:RNA helicase activity; IEA:UniProtKB-EC.
DR   InterPro; IPR012541; DBP10_C.
DR   InterPro; IPR033517; DDX54/DBP10.
DR   InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR   InterPro; IPR014001; Helicase_ATP-bd.
DR   InterPro; IPR001650; Helicase_C.
DR   InterPro; IPR027417; P-loop_NTPase.
DR   InterPro; IPR014014; RNA_helicase_DEAD_Q_motif.
DR   PANTHER; PTHR24031:SF292; PTHR24031:SF292; 1.
DR   Pfam; PF08147; DBP10CT; 1.
DR   Pfam; PF00270; DEAD; 1.
DR   Pfam; PF00271; Helicase_C; 1.
DR   SMART; SM01123; DBP10CT; 1.
DR   SMART; SM00487; DEXDc; 1.
DR   SMART; SM00490; HELICc; 1.
DR   SUPFAM; SSF52540; SSF52540; 1.
DR   PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR   PROSITE; PS51194; HELICASE_CTER; 1.
DR   PROSITE; PS51195; Q_MOTIF; 1.
PE   2: Evidence at transcript level;
KW   ATP-binding; Complete proteome; Helicase; Hydrolase;
KW   Nucleotide-binding; Reference proteome; RNA-binding.
FT   CHAIN         1    851       DEAD-box ATP-dependent RNA helicase 29.
FT                                /FTId=PRO_0000302059.
FT   DOMAIN       80    253       Helicase ATP-binding.
FT                                {ECO:0000255|PROSITE-ProRule:PRU00541}.
FT   DOMAIN      277    426       Helicase C-terminal.
FT                                {ECO:0000255|PROSITE-ProRule:PRU00542}.
FT   NP_BIND      93    100       ATP. {ECO:0000255|PROSITE-
FT                                ProRule:PRU00541}.
FT   MOTIF        49     77       Q motif.
FT   MOTIF       201    204       DEAD box.
FT   CONFLICT     30     30       P -> L (in Ref. 1; AAU01909).
FT                                {ECO:0000305}.
FT   CONFLICT     44     44       K -> R (in Ref. 1; AAU01909).
FT                                {ECO:0000305}.
FT   CONFLICT    342    342       K -> E (in Ref. 1; AAU01909).
FT                                {ECO:0000305}.
FT   CONFLICT    462    462       R -> K (in Ref. 1; AAU01909).
FT                                {ECO:0000305}.
SQ   SEQUENCE   851 AA;  95478 MW;  94214319EA0874B4 CRC64;
     MARLNPSKPS SRGGKPRSSS ADAMAEHKPP PGRPKREGEG ASKKKAKSGG FESMGLCEEV
     YRGVRHKGYR VPTPIQRKAM PLILAGHDIA AMARTGSGKT AAFLVPMIQR LRRHDAGAGI
     RALILSPTRD LATQTLKFAQ QLGKFTDLKI SLIVGGDSME SQFEELAENP DIIIATPGRL
     VHHLAEVEDL NLRTVEYVVF DEADSLFSLG LIQQLHDILH KLSDTRQTLL FSATLPQALA
     DFAKAGLRDP QIVRLDLDKK ISPDLKLAFF TLRQEEKLAA LLYLVRERIS SEEQTIIFVS
     TKHHVEFLNI LFREEGLEPS LSYGAMDQEA RNIHISKFRA RKTMILIVTD VAARGLDIPL
     LDNVVNWDFP AKPKLFVHRV GRVARQGRSG TAYTFVTSED MAYLLDLHLF LSKPLRPAPT
     EEELLKDMEG MNLKIDRALA NGETVYGRFP QTIIDLVSDG IREVINGCTD LIALEKPCTN
     AFHLYLKTRP MPSTESIRRV KDLPREGLHP IFRDVLGSDE LSALAFSERL KSFRPKQTIL
     EAEGEAARGS NQWLDVMKKK REVHEGIINL VHQKNNVDHE PKEELVENIS NWERKDVCGN
     KRKLQSFRDE EYYISSVPQN QHLEAGLSVR ANEGFVENRL DAAVLDLVDD ETSGMQAQKT
     RYHWKKNKFV KLNSGDRVTA TGKIKTESGA KLKPTKTGIY KKWQQKTHRS IDTGRKYGGF
     AEEGASTTGS HQRGNRKHTA AGRGRRYIPN ADVPSEIRNP EQIQKSRQQK AMDIARMKNR
     STKESKFQKF QKNNRRHDGP SKDGKFQKNR RPDGNGKNRR PDGNGKGRGK GKGNANGFGK
     GKGKMKGKGT R
//
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