ID A3I094_9BACT Unreviewed; 429 AA.
AC A3I094;
DT 03-APR-2007, integrated into UniProtKB/TrEMBL.
DT 03-APR-2007, sequence version 1.
DT 27-MAR-2024, entry version 93.
DE SubName: Full=Sigma-54-dependent transcriptional regulator {ECO:0000313|EMBL:EAZ79890.1};
GN ORFNames=ALPR1_14714 {ECO:0000313|EMBL:EAZ79890.1};
OS Algoriphagus machipongonensis.
OC Bacteria; Bacteroidota; Cytophagia; Cytophagales; Cyclobacteriaceae;
OC Algoriphagus.
OX NCBI_TaxID=388413 {ECO:0000313|EMBL:EAZ79890.1, ECO:0000313|Proteomes:UP000003919};
RN [1] {ECO:0000313|EMBL:EAZ79890.1, ECO:0000313|Proteomes:UP000003919}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=PR1 {ECO:0000313|EMBL:EAZ79890.1,
RC ECO:0000313|Proteomes:UP000003919};
RX PubMed=21183675; DOI=10.1128/JB.01421-10;
RA Alegado R.A., Ferriera S., Nusbaum C., Young S.K., Zeng Q., Imamovic A.,
RA Fairclough S.R., King N.;
RT "Complete genome sequence of Algoriphagus sp. PR1, bacterial prey of a
RT colony-forming choanoflagellate.";
RL J. Bacteriol. 193:1485-1486(2011).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EAZ79890.1}.
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DR EMBL; AAXU02000001; EAZ79890.1; -; Genomic_DNA.
DR RefSeq; WP_008201635.1; NZ_CM001023.1.
DR AlphaFoldDB; A3I094; -.
DR STRING; 388413.ALPR1_14714; -.
DR eggNOG; COG2204; Bacteria.
DR HOGENOM; CLU_000445_119_0_10; -.
DR OrthoDB; 9782110at2; -.
DR Proteomes; UP000003919; Chromosome.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025944; Sigma_54_int_dom_CS.
DR PANTHER; PTHR32071:SF120; L-LYSINE AMINOMUTASE REGULATOR; 1.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00688; SIGMA54_INTERACT_3; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000003919};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 16..245
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
FT REGION 332..372
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 339..360
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 429 AA; 48555 MW; 83D4CDBD33FDB343 CRC64;
MISNSEIQTV KQRFGIIGNS PLLNHAIQVA MQASPTDMTV LITGESGSGK ESFSKIIHSL
SKRKHGKFIA INCGAIPEGT IDSELFGHEK GSFTGAHEAR KGYFEVTDGG SIFLDEIGEM
PLGTQARLLR VLENGEFIKV GSSKVQKTNV RVITATNVKL LNAVEKGKFR EDLYYRLNTV
PIFVPPLRER GEDIVLLFRK FTSDFSEKYH VKPISLDHEA QRLLMRYPFP GNIRQLKNLA
EQISLLEESR EVNGETISKY LPTDNSRLPM ALSHQSSGKE ATDFSERDIL YKVLFEMKKD
MNDLKKLVLE SYQSGGLNQS IIQKHQGLFE DMDSGITPKE KSDSSSNYSV PLVISPQKNN
EPSEEYEDEG IEDIFHEEDD NSLSLEKKEK EMILKALRKH NNKRKYAASD LGISERTLYR
KIKQYEIDQ
//
