ID A3Q9N1_SHELP Unreviewed; 640 AA.
AC A3Q9N1;
DT 17-APR-2007, integrated into UniProtKB/TrEMBL.
DT 17-APR-2007, sequence version 1.
DT 24-JAN-2024, entry version 90.
DE SubName: Full=Diguanylate cyclase/phosphodiesterase {ECO:0000313|EMBL:ABO22179.1};
DE Flags: Precursor;
GN OrderedLocusNames=Shew_0307 {ECO:0000313|EMBL:ABO22179.1};
OS Shewanella loihica (strain ATCC BAA-1088 / PV-4).
OC Bacteria; Pseudomonadota; Gammaproteobacteria; Alteromonadales;
OC Shewanellaceae; Shewanella.
OX NCBI_TaxID=323850 {ECO:0000313|EMBL:ABO22179.1, ECO:0000313|Proteomes:UP000001558};
RN [1] {ECO:0000313|EMBL:ABO22179.1, ECO:0000313|Proteomes:UP000001558}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC BAA-1088 / PV-4 {ECO:0000313|Proteomes:UP000001558};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Chain P., Malfatti S., Shin M., Vergez L., Schmutz J., Larimer F., Land M.,
RA Hauser L., Kyrpides N., Mikhailova N., Romine M.F., Serres G.,
RA Fredrickson J., Tiedje J., Richardson P.;
RT "Complete sequence of Shewanella loihica PV-4.";
RL Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP000606; ABO22179.1; -; Genomic_DNA.
DR RefSeq; WP_011864113.1; NC_009092.1.
DR AlphaFoldDB; A3Q9N1; -.
DR STRING; 323850.Shew_0307; -.
DR KEGG; slo:Shew_0307; -.
DR eggNOG; COG2199; Bacteria.
DR eggNOG; COG2200; Bacteria.
DR eggNOG; COG2770; Bacteria.
DR HOGENOM; CLU_000445_109_1_6; -.
DR OMA; LPNRQYM; -.
DR OrthoDB; 5894408at2; -.
DR Proteomes; UP000001558; Chromosome.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0007165; P:signal transduction; IEA:InterPro.
DR CDD; cd01948; EAL; 1.
DR CDD; cd06225; HAMP; 1.
DR Gene3D; 3.30.110.200; -; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 6.10.340.10; -; 1.
DR Gene3D; 3.20.20.450; EAL domain; 1.
DR Gene3D; 6.20.270.20; LapD/MoxY periplasmic domain; 1.
DR InterPro; IPR001633; EAL_dom.
DR InterPro; IPR035919; EAL_sf.
DR InterPro; IPR000160; GGDEF_dom.
DR InterPro; IPR003660; HAMP_dom.
DR InterPro; IPR032244; LapD_MoxY_N.
DR InterPro; IPR042461; LapD_MoxY_peri_C.
DR InterPro; IPR029787; Nucleotide_cyclase.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR PANTHER; PTHR33121; CYCLIC DI-GMP PHOSPHODIESTERASE PDEF; 1.
DR PANTHER; PTHR33121:SF75; CYCLIC DI-GMP PHOSPHODIESTERASE PDEL-RELATED; 1.
DR Pfam; PF00563; EAL; 1.
DR Pfam; PF00990; GGDEF; 1.
DR Pfam; PF00672; HAMP; 1.
DR Pfam; PF16448; LapD_MoxY_N; 1.
DR SMART; SM00052; EAL; 1.
DR SMART; SM00267; GGDEF; 1.
DR SMART; SM00304; HAMP; 1.
DR SUPFAM; SSF141868; EAL domain-like; 1.
DR SUPFAM; SSF158472; HAMP domain-like; 1.
DR SUPFAM; SSF55073; Nucleotide cyclase; 1.
DR PROSITE; PS50883; EAL; 1.
DR PROSITE; PS50887; GGDEF; 1.
DR PROSITE; PS50885; HAMP; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Reference proteome {ECO:0000313|Proteomes:UP000001558};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 6..27
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 152..175
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 172..224
FT /note="HAMP"
FT /evidence="ECO:0000259|PROSITE:PS50885"
FT DOMAIN 263..394
FT /note="GGDEF"
FT /evidence="ECO:0000259|PROSITE:PS50887"
FT DOMAIN 403..640
FT /note="EAL"
FT /evidence="ECO:0000259|PROSITE:PS50883"
SQ SEQUENCE 640 AA; 73458 MW; 83680FF9FAA9BC72 CRC64;
MTLFRQIYSL LFGLFLVVVI SLAYVQFTET QSFLTKQMES DLNNTSHSLG IMLVPDLEAG
DIVGAETLIN VIFEGGYYQQ VKLTWLVDGK QQVWENDVKI EGVPQWFIDL GFFETIKRES
TITSGWIQLA NLEITAHPGF GYNELWRTLT NAIIVISILF LLAIMLARFG LTWILRPLHE
IAEHAAEIAQ RKFGPDMAIP KTSELKSVVE AFNSMSHQLK QIFSSLDEEV TELRKKNLVD
QVSKLPNRQY MMGRLNSWLS EPNNGSLMMA KFDWLEEVHS KYGYQVRDET IRLLSEKMQE
QLDEIAPSVI ARIAAYEFAF LITSAEQEQS SKYLHTLIRT VNQEISKAGC KPNEQFAIGI
AQRTDNMTVS DILAQTDNAL QKAIADNKVF HWFESNEKQL YTREQWREHL SAAISSKQFQ
FKWQPVYHTN KDEVVQRELY CQLTIGDKEI HAGQFMPYVE LLSLGSMLDR CLIETIVDNG
LLERNYEPIA INLTFNSLSD TTFHQWLNKF LRNTPLAQRI VFDIPEAGVY SDPDACQALC
NIIRDNGAHF GIDHFGRQFG SMSYLQNLRP SYVKLDQSFA YYDENEHNSE LCRALVNVAR
GLDIQIIVTG IQEQPQLARF EPLKANAYMG YIYPPTRVEL
//