ID A4CYD7_SYNPV Unreviewed; 355 AA.
AC A4CYD7;
DT 03-APR-2007, integrated into UniProtKB/TrEMBL.
DT 03-APR-2007, sequence version 1.
DT 27-MAR-2024, entry version 91.
DE SubName: Full=Type II alternative RNA polymerase sigma factor, sigma-70 family protein {ECO:0000313|EMBL:EAR17264.1};
GN ORFNames=WH7805_08867 {ECO:0000313|EMBL:EAR17264.1};
OS Synechococcus sp. (strain WH7805).
OC Bacteria; Cyanobacteriota; Cyanophyceae; Synechococcales; Synechococcaceae;
OC Synechococcus.
OX NCBI_TaxID=59931 {ECO:0000313|EMBL:EAR17264.1, ECO:0000313|Proteomes:UP000001224};
RN [1] {ECO:0000313|EMBL:EAR17264.1, ECO:0000313|Proteomes:UP000001224}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=WH7805 {ECO:0000313|Proteomes:UP000001224};
RA Scanlan D., Ostrowski M., Mazard S., Wilkinson N., Partensky F.,
RA Dufresne A., Garczarek L., Hess W., Gierga G., Voss B., Axmann I., Post A.,
RA Ferriera S., Johnson J., Kravitz S., Halpern A., Remington K., Beeson K.,
RA Tran B., Rogers Y.-H., Friedman R., Venter J.C.;
RL Submitted (FEB-2006) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family.
CC {ECO:0000256|ARBA:ARBA00007788}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EAR17264.1}.
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DR EMBL; AAOK01000008; EAR17264.1; -; Genomic_DNA.
DR RefSeq; WP_006042574.1; NZ_CH724168.1.
DR AlphaFoldDB; A4CYD7; -.
DR STRING; 59931.WH7805_08867; -.
DR eggNOG; COG0568; Bacteria.
DR HOGENOM; CLU_014793_3_4_3; -.
DR OrthoDB; 551215at2; -.
DR PhylomeDB; A4CYD7; -.
DR Proteomes; UP000001224; Unassembled WGS sequence.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.20.120.1810; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR009042; RNA_pol_sigma70_r1_2.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007624; RNA_pol_sigma70_r3.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR017848; RNA_pol_sigma_RpoD/SigA_cyanob.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02997; Sig70-cyanoRpoD; 1.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF47; RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC; 1.
DR Pfam; PF00140; Sigma70_r1_2; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04539; Sigma70_r3; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR PROSITE; PS00715; SIGMA70_1; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 148..161
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00715"
FT REGION 21..42
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 355 AA; 39364 MW; 7E6C01423E7F4616 CRC64;
MAPALAEASV PVSTLVLQTV SSKNQSSKSS PAKTTASRPS GTDVDLVRSY LRDIGRVPLL
SHQQEITLGR QVQELMELES VEAELQEKRG GEAVLAAELA KAAGLSAVQL KRKLQAGRRA
KERMVAANLR LVVSVAKKYT KRNMELLDLI QEGTIGLVRG VEKFDPTRGY KFSTYAYWWI
RQGITRAIAE KSRTIRLPIH ITEMLNKLKK GQRELSQELG RTPSVTELAS FVELPEDEVK
ELMCRARQPV SLEMKVGDGD DTELLDLLAG DGELPSEQVE GECLKGDLRD LLGQLPELQE
RVLRMRYGMD GEEPMSLTGI GRVIGISRDR VRNLERDGLA GLRRLSDQVE AYVAC
//
