ID A5BFF8_VITVI Unreviewed; 234 AA.
AC A5BFF8;
DT 12-JUN-2007, integrated into UniProtKB/TrEMBL.
DT 12-JUN-2007, sequence version 1.
DT 24-JAN-2024, entry version 77.
DE RecName: Full=WIBG Mago-binding domain-containing protein {ECO:0000259|SMART:SM01273};
GN OrderedLocusNames=VIT_12s0034g01010 {ECO:0000313|EMBL:CBI23878.3};
GN ORFNames=VITISV_043015 {ECO:0000313|EMBL:CAN63437.1};
OS Vitis vinifera (Grape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; Vitales; Vitaceae; Viteae; Vitis.
OX NCBI_TaxID=29760 {ECO:0000313|EMBL:CAN63437.1};
RN [1] {ECO:0000313|Proteomes:UP000009183}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pinot noir / PN40024 {ECO:0000313|Proteomes:UP000009183};
RX PubMed=17721507; DOI=10.1038/nature06148;
RG The French-Italian Public Consortium for Grapevine Genome Characterization.;
RA Jaillon O., Aury J.-M., Noel B., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Aubourg S., Vitulo N., Jubin C., Vezzi A., Legeai F.,
RA Hugueney P., Dasilva C., Horner D., Mica E., Jublot D., Poulain J.,
RA Bruyere C., Billault A., Segurens B., Gouyvenoux M., Ugarte E.,
RA Cattonaro F., Anthouard V., Vico V., Del Fabbro C., Alaux M.,
RA Di Gaspero G., Dumas V., Felice N., Paillard S., Juman I., Moroldo M.,
RA Scalabrin S., Canaguier A., Le Clainche I., Malacrida G., Durand E.,
RA Pesole G., Laucou V., Chatelet P., Merdinoglu D., Delledonne M.,
RA Pezzotti M., Lecharny A., Scarpelli C., Artiguenave F., Pe M.E., Valle G.,
RA Morgante M., Caboche M., Adam-Blondon A.-F., Weissenbach J., Quetier F.,
RA Wincker P.;
RT "The grapevine genome sequence suggests ancestral hexaploidization in major
RT angiosperm phyla.";
RL Nature 449:463-467(2007).
RN [2] {ECO:0000313|EMBL:CAN63437.1}
RP NUCLEOTIDE SEQUENCE.
RA Velasco R., Zharkikh A., Troggio M., Cartwright D.A., Cestaro A., Pruss D.,
RA Pindo M., FitzGerald L.M., Vezzulli S., Reid J., Malacarne G., Iliev D.,
RA Coppola G., Wardell B., Micheletti D., Macalma T., Facci M., Mitchell J.T.,
RA Perazzolli M., Eldredge G., Gatto P., Oyzerski R., Moretto M., Gutin N.,
RA Stefanini M., Chen Y., Segala C., Davenport C., Dematte L., Mraz A.,
RA Battilana J., Stormo K., Costa F., Tao Q., Si-Ammour A., Harkins T.,
RA Lackey A., Perbost C., Taillon B., Stella A., Solovyev V., Fawcett J.A.,
RA Sterck L., Vandepoele K., Grando S.M., Toppo S., Moser C., Lanchbury J.,
RA Bogden R., Skolnick M., Sgaramella V., Bhatnagar S.K., Fontana P.,
RA Gutin A., Van de Peer Y., Salamini F., Viola R.;
RT "The first genome sequence of an elite grapevine cultivar (Pinot noir Vitis
RT vinifera L.): coping with a highly heterozygous genome.";
RL PLoS ONE 2:e1326-e1326(2007).
RN [3] {ECO:0000313|EMBL:CBI23878.3}
RP NUCLEOTIDE SEQUENCE.
RA Vitulo N., Olivier J., Forcato C., Albiero A., D'Angelo M., Zimbello R.,
RA Schiavon R., Rigobello C., Policriti A., Clepet C., Casagrande A.,
RA Choisne N., Vezzi A., Hugueney P., Horner D., Mica E., Cattonaro F.,
RA Del Fabbro C., Alaux M., Di Gaspero G., Scalabrin S., Pesole G.,
RA Delledonne M., Pezzotti M., Pe E.M., Caboche M., Adam-Blondon A.-F.,
RA Weissenbach J., Quetier F., Wincker P., Morgante M., Valle G.;
RT "High quality assembly and annotation of grapevine genome.";
RL Submitted (MAY-2011) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; AM457644; CAN63437.1; -; Genomic_DNA.
DR EMBL; FN595497; CBI23878.3; -; Genomic_DNA.
DR AlphaFoldDB; A5BFF8; -.
DR STRING; 29760.A5BFF8; -.
DR PaxDb; 29760-VIT_12s0034g01010-t01; -.
DR EnsemblPlants; Vitvi12g01800_t001; Vitvi12g01800_P001; Vitvi12g01800.
DR Gramene; Vitvi12g01800_t001; Vitvi12g01800_P001; Vitvi12g01800.
DR eggNOG; KOG4325; Eukaryota.
DR HOGENOM; CLU_074603_2_0_1; -.
DR OMA; IPGCADS; -.
DR Proteomes; UP000009183; Chromosome 12.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0035145; C:exon-exon junction complex; IBA:GO_Central.
DR GO; GO:0005730; C:nucleolus; IEA:EnsemblPlants.
DR GO; GO:0005654; C:nucleoplasm; IEA:EnsemblPlants.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:1903259; P:exon-exon junction complex disassembly; IBA:GO_Central.
DR GO; GO:0010628; P:positive regulation of gene expression; IEA:EnsemblPlants.
DR InterPro; IPR039333; PYM1.
DR InterPro; IPR015362; WIBG_mago-bd.
DR InterPro; IPR036348; WIBG_N_sf.
DR PANTHER; PTHR22959:SF0; PARTNER OF Y14 AND MAGO; 1.
DR PANTHER; PTHR22959; PYM PROTEIN; 1.
DR Pfam; PF09282; Mago-bind; 1.
DR SMART; SM01273; Mago-bind; 1.
DR SUPFAM; SSF101931; Pym (Within the bgcn gene intron protein, WIBG), N-terminal domain; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000009183}.
FT DOMAIN 26..52
FT /note="WIBG Mago-binding"
FT /evidence="ECO:0000259|SMART:SM01273"
FT REGION 68..117
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 153..175
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 181..234
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 234 AA; 26059 MW; 556463C67E8A0B6D CRC64;
MAGSDGREGE EELKQLAELS KSLKEGERLL APTRRPDGTL RKPIRIRAGY VPQDEVAIYQ
SKGALWRKEM ASQEGPPGYD PPTDAKPKTK SVKRNERKKE KRLQAALDKG KNLEQMVDGE
VNQDGVLSAE DVNHGSEFVE SVASQMNELT VTENPTTVTP PSESIECLNP GGAAPDIDKR
IRALKKKIRL TEAQQQKASQ QEMKPEQLDK MMKLEGWQKE LKLLEDKKAE LAAS
//
