ID A5D9H9_BOVIN Unreviewed; 368 AA.
AC A5D9H9; F1MFH2;
DT 12-JUN-2007, integrated into UniProtKB/TrEMBL.
DT 12-JUN-2007, sequence version 1.
DT 27-MAR-2024, entry version 113.
DE SubName: Full=DNA polymerase delta interacting protein 2 {ECO:0000313|EMBL:ABQ13038.1, ECO:0000313|Ensembl:ENSBTAP00000010675.5};
DE SubName: Full=Polymerase (DNA-directed), delta interacting protein 2 {ECO:0000313|EMBL:AAI46201.1};
GN Name=POLDIP2 {ECO:0000313|EMBL:ABQ13038.1,
GN ECO:0000313|Ensembl:ENSBTAP00000010675.5,
GN ECO:0000313|VGNC:VGNC:33116};
OS Bos taurus (Bovine).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia;
OC Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae;
OC Bovinae; Bos.
OX NCBI_TaxID=9913 {ECO:0000313|EMBL:ABQ13038.1};
RN [1] {ECO:0000313|EMBL:ABQ13038.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Pooled {ECO:0000313|EMBL:ABQ13038.1};
RX PubMed=16305752; DOI=10.1186/1471-2164-6-166;
RA Harhay G.P., Sonstegard T.S., Keele J.W., Heaton M.P., Clawson M.L.,
RA Snelling W.M., Wiedmann R.T., Van Tassell C.P., Smith T.P.;
RT "Characterization of 954 bovine full-CDS cDNA sequences.";
RL BMC Genomics 6:166-166(2005).
RN [2] {ECO:0000313|EMBL:ABQ13038.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Pooled {ECO:0000313|EMBL:ABQ13038.1};
RA Harhay G.P., Sonstegard T.S., Van Tassell C.P., Clawson M.L., Heaton M.P.,
RA Keele J.W., Snelling W.M., Weidmann R.T., Smith T.P.L.;
RL Submitted (MAY-2007) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:AAI46201.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=L1 Hereford {ECO:0000313|EMBL:AAI46201.1};
RC TISSUE=Basal ganglia {ECO:0000313|EMBL:AAI46201.1};
RA Moore S., Alexander L., Brownstein M., Guan L., Lobo S., Meng Y.,
RA Tanaguchi M., Wang Z., Yu J., Prange C., Schreiber K., Shenmen C.,
RA Wagner L., Bala M., Barbazuk S., Barber S., Babakaiff R., Beland J.,
RA Chun E., Del Rio L., Gibson S., Hanson R., Kirkpatrick R., Liu J.,
RA Matsuo C., Mayo M., Santos R.R., Stott J., Tsai M., Wong D., Siddiqui A.,
RA Holt R., Jones S.J., Marra M.A.;
RL Submitted (JUN-2007) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|Ensembl:ENSBTAP00000010675.5, ECO:0000313|Proteomes:UP000009136}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Hereford {ECO:0000313|Ensembl:ENSBTAP00000010675.5,
RC ECO:0000313|Proteomes:UP000009136};
RA Rosen B.D., Bickhart D.M., Koren S., Schnabel R.D., Hall R., Zimin A.,
RA Dreischer C., Schultheiss S., Schroeder S.G., Elsik C.G., Couldrey C.,
RA Liu G.E., Van Tassell C.P., Phillippy A.M., Smith T.P.L., Medrano J.F.;
RT "ARS-UCD1.2.";
RL Submitted (MAR-2018) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|Ensembl:ENSBTAP00000010675.5}
RP IDENTIFICATION.
RC STRAIN=Hereford {ECO:0000313|Ensembl:ENSBTAP00000010675.5};
RG Ensembl;
RL Submitted (NOV-2023) to UniProtKB.
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DR EMBL; BC146200; AAI46201.1; -; mRNA.
DR EMBL; BT030598; ABQ13038.1; -; mRNA.
DR RefSeq; NP_001091572.1; NM_001098103.1.
DR STRING; 9913.ENSBTAP00000010675; -.
DR PaxDb; 9913-ENSBTAP00000010675; -.
DR Ensembl; ENSBTAT00000010675.6; ENSBTAP00000010675.5; ENSBTAG00000008116.6.
DR GeneID; 539673; -.
DR KEGG; bta:539673; -.
DR CTD; 26073; -.
DR VEuPathDB; HostDB:ENSBTAG00000008116; -.
DR VGNC; VGNC:33116; POLDIP2.
DR eggNOG; KOG4408; Eukaryota.
DR GeneTree; ENSGT00940000153571; -.
DR HOGENOM; CLU_051858_0_0_1; -.
DR OMA; IMPYSST; -.
DR OrthoDB; 3713840at2759; -.
DR TreeFam; TF314882; -.
DR Proteomes; UP000009136; Chromosome 19.
DR Bgee; ENSBTAG00000008116; Expressed in corpus luteum and 107 other cell types or tissues.
DR GO; GO:0042645; C:mitochondrial nucleoid; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0070987; P:error-free translesion synthesis; IBA:GO_Central.
DR GO; GO:0007005; P:mitochondrion organization; IEA:Ensembl.
DR GO; GO:0016242; P:negative regulation of macroautophagy; IEA:Ensembl.
DR GO; GO:0045931; P:positive regulation of mitotic cell cycle; IEA:Ensembl.
DR Gene3D; 2.60.40.1470; ApaG domain; 1.
DR InterPro; IPR007474; ApaG_domain.
DR InterPro; IPR036767; ApaG_sf.
DR InterPro; IPR011722; Hemimethylated_DNA-bd_dom.
DR InterPro; IPR036623; Hemimethylated_DNA-bd_sf.
DR PANTHER; PTHR14289; F-BOX ONLY PROTEIN 3; 1.
DR PANTHER; PTHR14289:SF16; POLYMERASE DELTA-INTERACTING PROTEIN 2; 1.
DR Pfam; PF04379; DUF525; 1.
DR Pfam; PF08755; YccV-like; 1.
DR SMART; SM00992; YccV-like; 1.
DR SUPFAM; SSF110069; ApaG-like; 1.
DR SUPFAM; SSF141255; YccV-like; 1.
DR PROSITE; PS51087; APAG; 1.
PE 2: Evidence at transcript level;
KW Reference proteome {ECO:0000313|Proteomes:UP000009136}.
FT DOMAIN 235..360
FT /note="ApaG"
FT /evidence="ECO:0000259|PROSITE:PS51087"
FT REGION 32..55
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 368 AA; 41942 MW; C43316CBDCEC96AD CRC64;
MAGCVARRAL TVGSRWWSRS LTGTRGPRPL CAAGGAGAFP PVATTTTRRH LSSRNRPEGK
VLETVGVFEV PKQNGKYETG QLFLHSVFGY RGVVLFPWQA RLYDRDVASA APEKAENPAG
HGSKEVKGKT HTYYQVLIDA RDCPHISQRS QTEAVTFLAN HDDSRALYAI PGLDYVSHED
ILPYTSTDQV PIQHELFERF LLYDQTKAPP FVARETLRAW QEKNHPWLEL SDVHRETTEN
IRVTVIPFYM GMREAQNSHV YWWRYCIRLE NLDSDVVQLR ERHWRIFSLS GTLETVRGRG
VVGREPVLSK EQPAFQYSSH VSLQASSGHM WGTFRFERPD GSHFDVRIPP FSLESNKDEK
TPPSGLHW
//
