ID A7F4D5_SCLS1 Unreviewed; 495 AA.
AC A7F4D5;
DT 11-SEP-2007, integrated into UniProtKB/TrEMBL.
DT 11-SEP-2007, sequence version 1.
DT 24-JAN-2024, entry version 73.
DE RecName: Full=poly(A)-specific ribonuclease {ECO:0000256|ARBA:ARBA00012161};
DE EC=3.1.13.4 {ECO:0000256|ARBA:ARBA00012161};
GN ORFNames=SS1G_12459 {ECO:0000313|EMBL:EDN97606.1};
OS Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) (White mold)
OS (Whetzelinia sclerotiorum).
OC Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes;
OC Helotiales; Sclerotiniaceae; Sclerotinia.
OX NCBI_TaxID=665079 {ECO:0000313|EMBL:EDN97606.1, ECO:0000313|Proteomes:UP000001312};
RN [1] {ECO:0000313|Proteomes:UP000001312}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 18683 / 1980 / Ss-1 {ECO:0000313|Proteomes:UP000001312};
RX PubMed=21876677; DOI=.1371/journal.pgen.1002230;
RA Amselem J., Cuomo C.A., van Kan J.A., Viaud M., Benito E.P., Couloux A.,
RA Coutinho P.M., de Vries R.P., Dyer P.S., Fillinger S., Fournier E.,
RA Gout L., Hahn M., Kohn L., Lapalu N., Plummer K.M., Pradier J.M.,
RA Quevillon E., Sharon A., Simon A., ten Have A., Tudzynski B., Tudzynski P.,
RA Wincker P., Andrew M., Anthouard V., Beever R.E., Beffa R., Benoit I.,
RA Bouzid O., Brault B., Chen Z., Choquer M., Collemare J., Cotton P.,
RA Danchin E.G., Da Silva C., Gautier A., Giraud C., Giraud T., Gonzalez C.,
RA Grossetete S., Guldener U., Henrissat B., Howlett B.J., Kodira C.,
RA Kretschmer M., Lappartient A., Leroch M., Levis C., Mauceli E.,
RA Neuveglise C., Oeser B., Pearson M., Poulain J., Poussereau N.,
RA Quesneville H., Rascle C., Schumacher J., Segurens B., Sexton A., Silva E.,
RA Sirven C., Soanes D.M., Talbot N.J., Templeton M., Yandava C., Yarden O.,
RA Zeng Q., Rollins J.A., Lebrun M.H., Dickman M.;
RT "Genomic analysis of the necrotrophic fungal pathogens Sclerotinia
RT sclerotiorum and Botrytis cinerea.";
RL PLoS Genet. 7:E1002230-E1002230(2011).
CC -!- CATALYTIC ACTIVITY:
CC Reaction=Exonucleolytic cleavage of poly(A) to 5'-AMP.; EC=3.1.13.4;
CC Evidence={ECO:0000256|ARBA:ARBA00001663};
CC -!- SIMILARITY: Belongs to the CAF1 family.
CC {ECO:0000256|ARBA:ARBA00008372}.
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DR EMBL; CH476641; EDN97606.1; -; Genomic_DNA.
DR RefSeq; XP_001586473.1; XM_001586423.1.
DR AlphaFoldDB; A7F4D5; -.
DR STRING; 665079.A7F4D5; -.
DR EnsemblFungi; EDN97606; EDN97606; SS1G_12459.
DR GeneID; 5482487; -.
DR KEGG; ssl:SS1G_12459; -.
DR VEuPathDB; FungiDB:sscle_06g054570; -.
DR eggNOG; KOG0304; Eukaryota.
DR HOGENOM; CLU_027974_3_0_1; -.
DR InParanoid; A7F4D5; -.
DR OMA; QMRDRIF; -.
DR OrthoDB; 341493at2759; -.
DR Proteomes; UP000001312; Unassembled WGS sequence.
DR GO; GO:0030015; C:CCR4-NOT core complex; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0000932; C:P-body; IBA:GO_Central.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0004535; F:poly(A)-specific ribonuclease activity; IBA:GO_Central.
DR GO; GO:0043928; P:exonucleolytic catabolism of deadenylated mRNA; IBA:GO_Central.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR039637; CNOT7/CNOT8/Pop2.
DR InterPro; IPR006941; RNase_CAF1.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR PANTHER; PTHR10797; CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT; 1.
DR PANTHER; PTHR10797:SF0; CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 7; 1.
DR Pfam; PF04857; CAF1; 2.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000001312};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT REGION 1..43
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 429..495
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 13..27
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 495 AA; 53825 MW; 0FAF00307AC71DFB CRC64;
MPPRMQGYGG APNSMASHYQ QYPPHTQPHT AGLPPPGSIG NQFMSANSMS NAFANGANMG
IPGGFSAPGL PLQGGGLASQ AAQMSFAAAP LQQQGHNGMA DSGTRGMRDK GRIRDVWKGN
LHEEMAILRQ LVDKYPYISM DAKFPGIVAR PMGSFNGRGD YHYQCLRCNV DLLKLIQLGI
TLFSEDGESL PATPHSDSGL DRNSAGRRIG NGVVQVPCTW QFNFKFSLSD DMYAEKGIDE
RKAAGTDFSR LKEEGIDPFE FGAVLISSGL VCDEEKRWIS GHAGYDFGYL TKIMLQRALP
DDEREFDMLM KKFFPSVYDI KYLMQQGTIM SKLGQLSHVD AVTAELLQRN ERHPNLEAMI
DVLKVKRLGA IHQAGSDSLV NGRVFFKLRE RLFDGEIGDE HLGRVFGINL QEANTAATTQ
QTTPQHYNQY QENTTPNQNG SGSSFANGAP STPNNGNANL ATTPAHNNNG GNGLGPLTPS
NGGGSFGHFQ YANKQ
//