ID A8L0E4_FRASN Unreviewed; 434 AA.
AC A8L0E4;
DT 04-DEC-2007, integrated into UniProtKB/TrEMBL.
DT 04-DEC-2007, sequence version 1.
DT 27-MAR-2024, entry version 96.
DE SubName: Full=RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABW13039.1};
GN ORFNames=Franean1_3641 {ECO:0000313|EMBL:ABW13039.1};
OS Frankia sp. (strain EAN1pec).
OC Bacteria; Actinomycetota; Actinomycetes; Frankiales; Frankiaceae; Frankia.
OX NCBI_TaxID=298653 {ECO:0000313|EMBL:ABW13039.1};
RN [1] {ECO:0000313|EMBL:ABW13039.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=EAN1.pec {ECO:0000313|EMBL:ABW13039.1};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Hammon N.,
RA Israni S., Dalin E., Tice H., Pitluck S., Saunders E., Brettin T.,
RA Bruce D., Detter J.C., Han C., Schmutz J., Larimer F., Land M., Hauser L.,
RA Kyrpides N., Kim E., Rawnsley T., Niemann J., Benson D.R., Huang Y.,
RA Mastronunzio J., Bassi C.A., Tisa L.S., Richardson P.;
RT "Complete sequence of Frankia sp. EAN1pec.";
RL Submitted (AUG-2007) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC {ECO:0000256|ARBA:ARBA00010641}.
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DR EMBL; CP000820; ABW13039.1; -; Genomic_DNA.
DR AlphaFoldDB; A8L0E4; -.
DR STRING; 298653.Franean1_3641; -.
DR KEGG; fre:Franean1_3641; -.
DR eggNOG; COG4941; Bacteria.
DR HOGENOM; CLU_035311_1_0_11; -.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0016987; F:sigma factor activity; IEA:InterPro.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR GO; GO:0050896; P:response to stimulus; IEA:UniProt.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR046531; DUF6596.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR013249; RNA_pol_sigma70_r4_t2.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR47756:SF2; BLL6612 PROTEIN; 1.
DR PANTHER; PTHR47756; BLL6612 PROTEIN-RELATED; 1.
DR Pfam; PF20239; DUF6596; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF08281; Sigma70_r4_2; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 3: Inferred from homology;
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 28..87
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 135..185
FT /note="RNA polymerase sigma factor 70 region 4 type 2"
FT /evidence="ECO:0000259|Pfam:PF08281"
FT DOMAIN 203..304
FT /note="DUF6596"
FT /evidence="ECO:0000259|Pfam:PF20239"
SQ SEQUENCE 434 AA; 46115 MW; 378D32E3C62F85EB CRC64;
MPAGTGGPPS AEPARRAVEA VWRIESARIV GALARYTGDF ALAEDVAQEA VAEALVSWSR
DGEPANPVGW LLTTARRRAV DSFRRRAALD ERYAMVAGQL AEGEAVSGGL APAARPDDLP
WDPDRIDDDI LALMFVACHP VLSAEARVAL TLRAVGGLSS EEIARAFLVP VPTVQARITR
AKKTLAAARV AFELPPATER RGRLSDVLSV LYVIFTEGST ATSGDDLLRP DLAYEAIRLG
RTLAALLPDE PEVHGLLALC ELTAARFAAR TGPDGEAVLL EDQDRRRWDR SAIRRGMAAL
GRAAALGRGL GPYGLQAAIA ACHASAPSVA ETDWERIVLL YEALGRVAPS PVVELNRAVA
VAMAAGPREA LSIVDDLVAA GRLSGSHLLP SVRGELLSRL GRTSEARAEL ELAARLCRNV
RERSVLLRKA AALA
//
