ID A8LNE2_DINSH Unreviewed; 273 AA.
AC A8LNE2;
DT 04-DEC-2007, integrated into UniProtKB/TrEMBL.
DT 04-DEC-2007, sequence version 1.
DT 27-MAR-2024, entry version 77.
DE SubName: Full=Integrase {ECO:0000313|EMBL:ABV92212.1, ECO:0000313|EMBL:ABV94241.1};
DE SubName: Full=Putative insertion element {ECO:0000313|EMBL:ABV93655.1};
DE SubName: Full=Putative integrase {ECO:0000313|EMBL:ABV93841.1};
GN OrderedLocusNames=Dshi_0464 {ECO:0000313|EMBL:ABV92212.1}, Dshi_0876
GN {ECO:0000313|EMBL:ABV92621.1}, Dshi_1913
GN {ECO:0000313|EMBL:ABV93655.1}, Dshi_2104
GN {ECO:0000313|EMBL:ABV93841.1}, Dshi_2508
GN {ECO:0000313|EMBL:ABV94241.1};
OS Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Roseobacteraceae; Dinoroseobacter.
OX NCBI_TaxID=398580 {ECO:0000313|EMBL:ABV93655.1, ECO:0000313|Proteomes:UP000006833};
RN [1] {ECO:0000313|EMBL:ABV93655.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=DFL 12 {ECO:0000313|EMBL:ABV93655.1};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E.,
RA Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Detter J.C.,
RA Han C., Tapia R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.,
RA Kim E., Richardson P.;
RT "Complete sequence of chromosome of Dinoroseobacter shibae DFL 12.";
RL Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ABV93655.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=DFL 12 {ECO:0000313|EMBL:ABV93655.1};
RA Wagner-Doebler I., Ballhausen B., Baumgart M., Brinkhoff T., Buchholz I.,
RA Bunk B., Cypionka H., Daniel R., Drepper T., Gerdts G., Hahnke S., Han C.,
RA Jahn D., Kalhoefer D., Kiss H., Klenk H.-P., Kyrpides N., Liebl W.,
RA Liesegang H., Meincke L., Pati A., Petersen Jr., Piekarski T.,
RA Pommerenke C., Pradella S., Pukall R., Rabus R., Stackebrandt E., Thole S.,
RA Thompson L., Tielen P., Tomasch J., von Jan M., Wanphrut N., Wichels A.,
RA Zech H., Simon M.;
RT "The complete genome sequence of the algal symbiont Dinoroseobacter shibae
RT - a hitchhiker`s guide to life in the sea.";
RL Submitted (JUN-2009) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|Proteomes:UP000006833}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 16493 / NCIMB 14021 / DFL 12
RC {ECO:0000313|Proteomes:UP000006833};
RX PubMed=19741735; DOI=10.1038/ismej.2009.94;
RA Wagner-Dobler I., Ballhausen B., Berger M., Brinkhoff T., Buchholz I.,
RA Bunk B., Cypionka H., Daniel R., Drepper T., Gerdts G., Hahnke S., Han C.,
RA Jahn D., Kalhoefer D., Kiss H., Klenk H.P., Kyrpides N., Liebl W.,
RA Liesegang H., Meincke L., Pati A., Petersen J., Piekarski T.,
RA Pommerenke C., Pradella S., Pukall R., Rabus R., Stackebrandt E., Thole S.,
RA Thompson L., Tielen P., Tomasch J., von Jan M., Wanphrut N., Wichels A.,
RA Zech H., Simon M.;
RT "The complete genome sequence of the algal symbiont Dinoroseobacter shibae:
RT a hitchhiker's guide to life in the sea.";
RL ISME J. 4:61-77(2010).
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DR EMBL; CP000830; ABV92212.1; -; Genomic_DNA.
DR EMBL; CP000830; ABV92621.1; -; Genomic_DNA.
DR EMBL; CP000830; ABV93655.1; -; Genomic_DNA.
DR EMBL; CP000830; ABV93841.1; -; Genomic_DNA.
DR EMBL; CP000830; ABV94241.1; -; Genomic_DNA.
DR AlphaFoldDB; A8LNE2; -.
DR STRING; 398580.Dshi_0464; -.
DR KEGG; dsh:Dshi_0464; -.
DR KEGG; dsh:Dshi_0876; -.
DR KEGG; dsh:Dshi_1913; -.
DR KEGG; dsh:Dshi_2104; -.
DR KEGG; dsh:Dshi_2508; -.
DR eggNOG; COG2801; Bacteria.
DR HOGENOM; CLU_027402_31_0_5; -.
DR Proteomes; UP000006833; Chromosome.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0015074; P:DNA integration; IEA:InterPro.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR025948; HTH-like_dom.
DR InterPro; IPR001584; Integrase_cat-core.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR InterPro; IPR048020; Transpos_IS3.
DR NCBIfam; NF033516; transpos_IS3; 1.
DR PANTHER; PTHR47515:SF1; BLR2054 PROTEIN; 1.
DR PANTHER; PTHR47515; LOW CALCIUM RESPONSE LOCUS PROTEIN T; 1.
DR Pfam; PF13276; HTH_21; 1.
DR Pfam; PF13683; rve_3; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50994; INTEGRASE; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000006833}.
FT DOMAIN 102..263
FT /note="Integrase catalytic"
FT /evidence="ECO:0000259|PROSITE:PS50994"
FT REGION 246..273
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 246..266
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 273 AA; 32186 MW; A15A2AF257DA7970 CRC64;
MDWAMKTKGY NQRRACALAG IDPRVYRRRS KRLADTELRV RMKELASERR RFGYRRLHML
LKREGWEVNW KKLYRLYRDE GLTVRKRGGR KRAVGTRTPM AIPQGPNQRW SLDFMSDALE
DGRRFRVLNV IDDFSRECLA AVVDTSISGA RVARELDRIA ELRGYPCLVV SDNGTELTSN
AMLKWQEDRK VDWHYIAPGK PMQNGLVESF NGRMREECLN EHLFPSLRHA CRMIAAWRDD
YNHHRPHSSL DGLTPREYHQ RSREDQTLNR ANL
//
