ID A8LT62_DINSH Unreviewed; 334 AA.
AC A8LT62;
DT 04-DEC-2007, integrated into UniProtKB/TrEMBL.
DT 04-DEC-2007, sequence version 1.
DT 27-MAR-2024, entry version 91.
DE SubName: Full=Phage integrase {ECO:0000313|EMBL:ABV95429.1};
GN OrderedLocusNames=Dshi_3696 {ECO:0000313|EMBL:ABV95429.1}, Dshi_4006
GN {ECO:0000313|EMBL:ABV95733.1};
OS Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).
OG Plasmid pDSHI01 {ECO:0000313|EMBL:ABV95429.1,
OG ECO:0000313|Proteomes:UP000006833}, and
OG Plasmid pDSHI03 {ECO:0000313|EMBL:ABV95733.1,
OG ECO:0000313|Proteomes:UP000006833}.
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Roseobacteraceae; Dinoroseobacter.
OX NCBI_TaxID=398580 {ECO:0000313|EMBL:ABV95429.1, ECO:0000313|Proteomes:UP000006833};
RN [1] {ECO:0000313|EMBL:ABV95429.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=DFL 12 {ECO:0000313|EMBL:ABV95429.1};
RC PLASMID=pDSHI01 {ECO:0000313|EMBL:ABV95429.1}, and pDSHI03
RC {ECO:0000313|EMBL:ABV95733.1};
RG US DOE Joint Genome Institute;
RA Copeland A., Lucas S., Lapidus A., Barry K., Glavina del Rio T., Dalin E.,
RA Tice H., Pitluck S., Thompson L.S., Brettin T., Bruce D., Detter J.C.,
RA Han C., Tapia R., Schmutz J., Larimer F., Land M., Hauser L., Kyrpides N.,
RA Kim E., Richardson P.;
RT "Complete sequence of chromosome of Dinoroseobacter shibae DFL 12.";
RL Submitted (SEP-2007) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ABV95429.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=DFL 12 {ECO:0000313|EMBL:ABV95429.1};
RC PLASMID=pDSHI01 {ECO:0000313|EMBL:ABV95429.1}, and pDSHI03
RC {ECO:0000313|EMBL:ABV95733.1};
RA Liesegang H., Wagner-Doebler I.;
RT "The Roseobacter - microalgae symbiosis: Adaptation to viral pressure,
RT horizontal gene transfer, and ability to synthesize vitamine B12 under all
RT conditions are revealed by the genome sequence.";
RL Submitted (JUL-2009) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|Proteomes:UP000006833}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 16493 / NCIMB 14021 / DFL 12
RC {ECO:0000313|Proteomes:UP000006833};
RC PLASMID=Plasmid pDSHI01 {ECO:0000313|Proteomes:UP000006833}, and
RC Plasmid pDSHI03 {ECO:0000313|Proteomes:UP000006833};
RX PubMed=19741735; DOI=10.1038/ismej.2009.94;
RA Wagner-Dobler I., Ballhausen B., Berger M., Brinkhoff T., Buchholz I.,
RA Bunk B., Cypionka H., Daniel R., Drepper T., Gerdts G., Hahnke S., Han C.,
RA Jahn D., Kalhoefer D., Kiss H., Klenk H.P., Kyrpides N., Liebl W.,
RA Liesegang H., Meincke L., Pati A., Petersen J., Piekarski T.,
RA Pommerenke C., Pradella S., Pukall R., Rabus R., Stackebrandt E., Thole S.,
RA Thompson L., Tielen P., Tomasch J., von Jan M., Wanphrut N., Wichels A.,
RA Zech H., Simon M.;
RT "The complete genome sequence of the algal symbiont Dinoroseobacter shibae:
RT a hitchhiker's guide to life in the sea.";
RL ISME J. 4:61-77(2010).
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DR EMBL; CP000831; ABV95429.1; -; Genomic_DNA.
DR EMBL; CP000833; ABV95733.1; -; Genomic_DNA.
DR RefSeq; WP_012187107.1; NC_009957.1.
DR AlphaFoldDB; A8LT62; -.
DR KEGG; dsh:Dshi_3696; -.
DR KEGG; dsh:Dshi_4006; -.
DR HOGENOM; CLU_027562_9_1_5; -.
DR OrthoDB; 9801717at2; -.
DR Proteomes; UP000006833; Plasmid pDSHI01.
DR Proteomes; UP000006833; Plasmid pDSHI03.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0015074; P:DNA integration; IEA:UniProtKB-KW.
DR GO; GO:0006310; P:DNA recombination; IEA:UniProtKB-KW.
DR Gene3D; 1.10.150.130; -; 1.
DR Gene3D; 1.10.443.10; Intergrase catalytic core; 1.
DR InterPro; IPR044068; CB.
DR InterPro; IPR011010; DNA_brk_join_enz.
DR InterPro; IPR013762; Integrase-like_cat_sf.
DR InterPro; IPR002104; Integrase_catalytic.
DR InterPro; IPR010998; Integrase_recombinase_N.
DR InterPro; IPR004107; Integrase_SAM-like_N.
DR PANTHER; PTHR30349; PHAGE INTEGRASE-RELATED; 1.
DR PANTHER; PTHR30349:SF87; PROPHAGE INTEGRASE INTD-RELATED; 1.
DR Pfam; PF02899; Phage_int_SAM_1; 1.
DR Pfam; PF00589; Phage_integrase; 1.
DR SUPFAM; SSF56349; DNA breaking-rejoining enzymes; 1.
DR SUPFAM; SSF47823; lambda integrase-like, N-terminal domain; 1.
DR PROSITE; PS51900; CB; 1.
DR PROSITE; PS51898; TYR_RECOMBINASE; 1.
PE 4: Predicted;
KW DNA integration {ECO:0000256|ARBA:ARBA00022908};
KW DNA recombination {ECO:0000256|ARBA:ARBA00023172};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW ProRule:PRU01248}; Plasmid {ECO:0000313|EMBL:ABV95429.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000006833}.
FT DOMAIN 2..95
FT /note="Core-binding (CB)"
FT /evidence="ECO:0000259|PROSITE:PS51900"
FT DOMAIN 119..304
FT /note="Tyr recombinase"
FT /evidence="ECO:0000259|PROSITE:PS51898"
SQ SEQUENCE 334 AA; 37642 MW; E6B04E9BF46C360A CRC64;
MTPLAPDLSA FLQTHLPHEC GASRHTIAAY ACAFTLLLRF VTGRVKRTPS ELFIEDLDIQ
TIRAFLEHIE EGRANSVRSR NARLAAIKSF FRFVEHRQPA CLEQAMMIRA MPTKRTDAKL
IDYLTKEEVR ALLAAPNRHT PGGLRDRAML HLTYAAGLRA SELLAVRMDD FPDGSFSNVR
ILGKGRRERV LPLWKETQCA IRAWLAVRPG RVGPELFLNR DGRRMTRDGF AYRLRQHVAT
AERSTPSIAA KQVTPHVLRH SCAMHTLQAT GDIRKVALWL GHASIQTTEM YLRADPTEKL
ALLEAHHAPL IQPGKFREPS DKLMQILAVA AQRA
//
