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Database: UniProt
Entry: A8XH66_CAEBR
LinkDB: A8XH66_CAEBR
Original site: A8XH66_CAEBR 
ID   A8XH66_CAEBR            Unreviewed;       144 AA.
AC   A8XH66;
DT   15-JAN-2008, integrated into UniProtKB/TrEMBL.
DT   16-DEC-2008, sequence version 2.
DT   24-JAN-2024, entry version 79.
DE   SubName: Full=Protein CBR-RPB-4 {ECO:0000313|EMBL:CAP31990.2};
GN   Name=rpb-4 {ECO:0000313|WormBase:CBG13151};
GN   Synonyms=Cbr-rpb-4 {ECO:0000313|EMBL:CAP31990.2};
GN   ORFNames=CBG13151 {ECO:0000313|WormBase:CBG13151}, CBG_13151
GN   {ECO:0000313|EMBL:CAP31990.2};
OS   Caenorhabditis briggsae.
OC   Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC   Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
OC   Caenorhabditis.
OX   NCBI_TaxID=6238 {ECO:0000313|EMBL:CAP31990.2, ECO:0000313|Proteomes:UP000008549};
RN   [1] {ECO:0000313|EMBL:CAP31990.2, ECO:0000313|Proteomes:UP000008549}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=AF16 {ECO:0000313|EMBL:CAP31990.2,
RC   ECO:0000313|Proteomes:UP000008549};
RX   PubMed=14624247; DOI=10.1371/journal.pbio.0000045;
RA   Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N.,
RA   Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P.,
RA   Fitch D.H., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W.,
RA   Hillier L.W., Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A.,
RA   Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E.,
RA   Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA   Durbin R., Waterston R.H.;
RT   "The genome sequence of Caenorhabditis briggsae: a platform for comparative
RT   genomics.";
RL   PLoS Biol. 1:166-192(2003).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- SIMILARITY: Belongs to the eukaryotic RPB4 RNA polymerase subunit
CC       family. {ECO:0000256|ARBA:ARBA00025724}.
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DR   EMBL; HE601401; CAP31990.2; -; Genomic_DNA.
DR   AlphaFoldDB; A8XH66; -.
DR   STRING; 6238.A8XH66; -.
DR   EnsemblMetazoa; CBG13151.1; CBG13151.1; WBGene00033960.
DR   WormBase; CBG13151; CBP28935; WBGene00033960; Cbr-rpb-4.
DR   eggNOG; KOG2351; Eukaryota.
DR   HOGENOM; CLU_110332_2_1_1; -.
DR   InParanoid; A8XH66; -.
DR   OMA; TMRKFQS; -.
DR   OrthoDB; 5477031at2759; -.
DR   Proteomes; UP000008549; Chromosome II.
DR   GO; GO:0005665; C:RNA polymerase II, core complex; IBA:GO_Central.
DR   GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR   GO; GO:0031369; F:translation initiation factor binding; IBA:GO_Central.
DR   GO; GO:0034402; P:recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex; IBA:GO_Central.
DR   GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IBA:GO_Central.
DR   Gene3D; 1.20.1250.40; -; 1.
DR   InterPro; IPR010997; HRDC-like_sf.
DR   InterPro; IPR006590; RNA_pol_Rpb4/RPC9_core.
DR   InterPro; IPR045222; Rpb4-like.
DR   InterPro; IPR005574; Rpb4/RPC9.
DR   InterPro; IPR038324; Rpb4/RPC9_sf.
DR   PANTHER; PTHR21297; DNA-DIRECTED RNA POLYMERASE II; 1.
DR   PANTHER; PTHR21297:SF0; DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4; 1.
DR   Pfam; PF03874; RNA_pol_Rpb4; 1.
DR   SMART; SM00657; RPOL4c; 1.
DR   SUPFAM; SSF47819; HRDC-like; 1.
PE   3: Inferred from homology;
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008549}.
FT   DOMAIN          25..144
FT                   /note="RNA polymerase Rpb4/RPC9 core"
FT                   /evidence="ECO:0000259|SMART:SM00657"
SQ   SEQUENCE   144 AA;  16596 MW;  CA53C5B400E743F9 CRC64;
     MSSGGGNQKS DGQVEEDAAE CKFPKEFELN TCDALLTAEV YLLLEHRRQS NETKDEIEEM
     SEVFIKTLNY ARRMSRFKNR ETIRAVRAIF SEKHLHKFEV AQIANLCPEN AEEAKALVPS
     LENKIEESEL EEVLKDLQSK RTFQ
//
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