ID A8XM87_CAEBR Unreviewed; 589 AA.
AC A8XM87;
DT 15-JAN-2008, integrated into UniProtKB/TrEMBL.
DT 16-DEC-2008, sequence version 2.
DT 27-MAR-2024, entry version 87.
DE SubName: Full=Protein CBR-IFD-1 {ECO:0000313|EMBL:CAP33762.2};
GN Name=ifd-1 {ECO:0000313|WormBase:CBG15464};
GN Synonyms=Cbr-ifd-1 {ECO:0000313|EMBL:CAP33762.2};
GN ORFNames=CBG15464 {ECO:0000313|WormBase:CBG15464}, CBG_15464
GN {ECO:0000313|EMBL:CAP33762.2};
OS Caenorhabditis briggsae.
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae;
OC Caenorhabditis.
OX NCBI_TaxID=6238 {ECO:0000313|EMBL:CAP33762.2, ECO:0000313|Proteomes:UP000008549};
RN [1] {ECO:0000313|EMBL:CAP33762.2, ECO:0000313|Proteomes:UP000008549}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=AF16 {ECO:0000313|EMBL:CAP33762.2,
RC ECO:0000313|Proteomes:UP000008549};
RX PubMed=14624247; DOI=10.1371/journal.pbio.0000045;
RA Stein L.D., Bao Z., Blasiar D., Blumenthal T., Brent M.R., Chen N.,
RA Chinwalla A., Clarke L., Clee C., Coghlan A., Coulson A., D'Eustachio P.,
RA Fitch D.H., Fulton L.A., Fulton R.E., Griffiths-Jones S., Harris T.W.,
RA Hillier L.W., Kamath R., Kuwabara P.E., Mardis E.R., Marra M.A.,
RA Miner T.L., Minx P., Mullikin J.C., Plumb R.W., Rogers J., Schein J.E.,
RA Sohrmann M., Spieth J., Stajich J.E., Wei C., Willey D., Wilson R.K.,
RA Durbin R., Waterston R.H.;
RT "The genome sequence of Caenorhabditis briggsae: a platform for comparative
RT genomics.";
RL PLoS Biol. 1:166-192(2003).
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DR EMBL; HE601046; CAP33762.2; -; Genomic_DNA.
DR AlphaFoldDB; A8XM87; -.
DR STRING; 6238.A8XM87; -.
DR EnsemblMetazoa; CBG15464.1; CBG15464.1; WBGene00035722.
DR WormBase; CBG15464; CBP26658; WBGene00035722; Cbr-ifd-1.
DR eggNOG; KOG0977; Eukaryota.
DR HOGENOM; CLU_032944_0_0_1; -.
DR InParanoid; A8XM87; -.
DR OMA; WEEWYKK; -.
DR OrthoDB; 4640531at2759; -.
DR Proteomes; UP000008549; Unassembled WGS sequence.
DR GO; GO:0005882; C:intermediate filament; IEA:UniProtKB-KW.
DR GO; GO:0005635; C:nuclear envelope; IBA:GO_Central.
DR GO; GO:0005652; C:nuclear lamina; IBA:GO_Central.
DR GO; GO:0005200; F:structural constituent of cytoskeleton; IBA:GO_Central.
DR GO; GO:0031507; P:heterochromatin formation; IBA:GO_Central.
DR GO; GO:0006998; P:nuclear envelope organization; IBA:GO_Central.
DR GO; GO:0007097; P:nuclear migration; IBA:GO_Central.
DR GO; GO:0051664; P:nuclear pore localization; IBA:GO_Central.
DR GO; GO:0090435; P:protein localization to nuclear envelope; IBA:GO_Central.
DR Gene3D; 1.20.5.170; -; 1.
DR Gene3D; 2.60.40.1260; Lamin Tail domain; 1.
DR InterPro; IPR039008; IF_rod_dom.
DR InterPro; IPR001322; Lamin_tail_dom.
DR InterPro; IPR036415; Lamin_tail_dom_sf.
DR PANTHER; PTHR45721:SF14; INTERMEDIATE FILAMENT PROTEIN IFD-1; 1.
DR PANTHER; PTHR45721; LAMIN DM0-RELATED; 1.
DR Pfam; PF00038; Filament; 1.
DR Pfam; PF00932; LTD; 1.
DR SMART; SM01391; Filament; 1.
DR SUPFAM; SSF64593; Intermediate filament protein, coiled coil region; 2.
DR SUPFAM; SSF74853; Lamin A/C globular tail domain; 1.
DR PROSITE; PS51842; IF_ROD_2; 1.
DR PROSITE; PS51841; LTD; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Intermediate filament {ECO:0000256|ARBA:ARBA00022754};
KW Reference proteome {ECO:0000313|Proteomes:UP000008549}.
FT DOMAIN 50..403
FT /note="IF rod"
FT /evidence="ECO:0000259|PROSITE:PS51842"
FT DOMAIN 473..589
FT /note="LTD"
FT /evidence="ECO:0000259|PROSITE:PS51841"
FT COILED 40..81
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 160..201
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 589 AA; 68632 MW; 844C57E80F69D101 CRC64;
MKTARRVFNP VLAKIIESET ALPSGITSTG ALSGFAQQAA NTLRDNRNRE KQEIADLNNR
LARYIEKVRF LEAQNRVLDA DVGLFRQAAY IHSERIAVYY EAEKTSLVTL SREHDQKTST
HKQDIRRLEP EIATARKNWE SSVEHRRSLR LEKRTQLKRL SDIEAENAFV KRLINECEEE
KTHLQAEISR IRAEIKKILA KRDKERSGVS RNQQSAQDLL KKLSASISSH EIAIREEISN
ARRNSTDKNR EYFHRELHLA MKEIRDQFES NAKSSRKTWE EWYKKKITHI KEAGKKFETT
QIQEREEVIR IRVIVNELRT KITDADTMSS QLAKRIEEMK HRADEELRMF EYALNEKVFS
VNKMKEECMR MQVMIEKLLE YQTNLRNEIT HYRKLIDNAE NLRTTYQSNF VIDTPSPVMR
NTTSYHSNGS AFTMNVQESH YSEPYFSSMS HASYDISTTN RDSYDISNLS SINSQQFRSY
SRGDVKLIEH KDESIVIENS NNYKSKDLSN WKLQHYVDGA LRGTFIFPVA THIHPLEKIS
IHSLASSNLL DDLVATGIYS FDFSKKTKSV LLDDADEEVG WYAHVSYSH
//
