ID A9CKM6_AGRFC Unreviewed; 346 AA.
AC A9CKM6;
DT 15-JAN-2008, integrated into UniProtKB/TrEMBL.
DT 15-JAN-2008, sequence version 1.
DT 27-MAR-2024, entry version 91.
DE SubName: Full=Transcriptional regulator, AraC family {ECO:0000313|EMBL:AAK85986.1};
GN OrderedLocusNames=Atu0167 {ECO:0000313|EMBL:AAK85986.1};
OS Agrobacterium fabrum (strain C58 / ATCC 33970) (Agrobacterium tumefaciens
OS (strain C58)).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium;
OC Agrobacterium tumefaciens complex.
OX NCBI_TaxID=176299 {ECO:0000313|EMBL:AAK85986.1, ECO:0000313|Proteomes:UP000000813};
RN [1] {ECO:0000313|EMBL:AAK85986.1, ECO:0000313|Proteomes:UP000000813}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C58 / ATCC 33970 {ECO:0000313|Proteomes:UP000000813};
RX PubMed=11743193; DOI=10.1126/science.1066804;
RA Wood D.W., Setubal J.C., Kaul R., Monks D.E., Kitajima J.P., Okura V.K.,
RA Zhou Y., Chen L., Wood G.E., Almeida N.F.Jr., Woo L., Chen Y.,
RA Paulsen I.T., Eisen J.A., Karp P.D., Bovee D.Sr., Chapman P.,
RA Clendenning J., Deatherage G., Gillet W., Grant C., Kutyavin T., Levy R.,
RA Li M.J., McClelland E., Palmieri A., Raymond C., Rouse G.,
RA Saenphimmachak C., Wu Z., Romero P., Gordon D., Zhang S., Yoo H., Tao Y.,
RA Biddle P., Jung M., Krespan W., Perry M., Gordon-Kamm B., Liao L., Kim S.,
RA Hendrick C., Zhao Z.Y., Dolan M., Chumley F., Tingey S.V., Tomb J.F.,
RA Gordon M.P., Olson M.V., Nester E.W.;
RT "The genome of the natural genetic engineer Agrobacterium tumefaciens
RT C58.";
RL Science 294:2317-2323(2001).
RN [2] {ECO:0000313|EMBL:AAK85986.1, ECO:0000313|Proteomes:UP000000813}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=C58 / ATCC 33970 {ECO:0000313|Proteomes:UP000000813};
RX PubMed=11743194; DOI=10.1126/science.1066803;
RA Goodner B., Hinkle G., Gattung S., Miller N., Blanchard M., Qurollo B.,
RA Goldman B.S., Cao Y., Askenazi M., Halling C., Mullin L., Houmiel K.,
RA Gordon J., Vaudin M., Iartchouk O., Epp A., Liu F., Wollam C., Allinger M.,
RA Doughty D., Scott C., Lappas C., Markelz B., Flanagan C., Crowell C.,
RA Gurson J., Lomo C., Sear C., Strub G., Cielo C., Slater S.;
RT "Genome sequence of the plant pathogen and biotechnology agent
RT Agrobacterium tumefaciens C58.";
RL Science 294:2323-2328(2001).
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DR EMBL; AE007869; AAK85986.1; -; Genomic_DNA.
DR PIR; A97379; A97379.
DR PIR; AI2596; AI2596.
DR RefSeq; NP_353201.1; NC_003062.2.
DR RefSeq; WP_010970697.1; NC_003062.2.
DR AlphaFoldDB; A9CKM6; -.
DR STRING; 176299.Atu0167; -.
DR EnsemblBacteria; AAK85986; AAK85986; Atu0167.
DR KEGG; atu:Atu0167; -.
DR PATRIC; fig|176299.10.peg.157; -.
DR eggNOG; COG2207; Bacteria.
DR HOGENOM; CLU_047522_3_2_5; -.
DR OrthoDB; 9805730at2; -.
DR PhylomeDB; A9CKM6; -.
DR BioCyc; AGRO:ATU0167-MONOMER; -.
DR Proteomes; UP000000813; Chromosome circular.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR032687; AraC-type_N.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR018060; HTH_AraC.
DR PANTHER; PTHR47894; HTH-TYPE TRANSCRIPTIONAL REGULATOR GADX; 1.
DR PANTHER; PTHR47894:SF1; HTH-TYPE TRANSCRIPTIONAL REGULATOR VQSM; 1.
DR Pfam; PF12625; Arabinose_bd; 1.
DR Pfam; PF12833; HTH_18; 1.
DR SMART; SM00342; HTH_ARAC; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS01124; HTH_ARAC_FAMILY_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000000813};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 241..339
FT /note="HTH araC/xylS-type"
FT /evidence="ECO:0000259|PROSITE:PS01124"
SQ SEQUENCE 346 AA; 38569 MW; 13562D0B72C639B3 CRC64;
MPEKRVSDEI SVVAGLAAGV SNYARSRGID IVPICKALDI DPATFSSLTE RISLDRFSRL
LETCALISGD DAFGLQCAAT FPAGASGAFG YGLISAPTVR SFLRFLQDHV YYATNNSNFT
MVADATQVTL SWSFAPGIAK RDQYVDLSLA VLVQRLRDIL GERVNQIEIG LERQKPINIQ
LFKERLTRRV SFSQAIHTMR LPASLLDVAN PNADERLFEL MNLQCRMLRP ETSADPTHFI
DQVKRYMQMR LSDAELSLGE IAPYFNLSER SFQRRLAELG TNLNEIKDAI RKNAGFKLLV
ESDLPVSDIS YRLGYSTPGA FSRSVSRWFG ATPTDIRRKH AHHSAG
//
