ID   B1ZEG6_METPB            Unreviewed;       662 AA.
AC   B1ZEG6;
DT   20-MAY-2008, integrated into UniProtKB/TrEMBL.
DT   20-MAY-2008, sequence version 1.
DT   27-MAR-2024, entry version 96.
DE   SubName: Full=Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:ACB81030.1};
GN   OrderedLocusNames=Mpop_2875 {ECO:0000313|EMBL:ACB81030.1};
OS   Methylorubrum populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001)
OS   (Methylobacterium populi).
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC   Methylobacteriaceae; Methylorubrum.
OX   NCBI_TaxID=441620 {ECO:0000313|EMBL:ACB81030.1, ECO:0000313|Proteomes:UP000007136};
RN   [1] {ECO:0000313|EMBL:ACB81030.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=BJ001 {ECO:0000313|EMBL:ACB81030.1};
RG   US DOE Joint Genome Institute;
RA   Copeland A., Lucas S., Lapidus A., Glavina del Rio T., Dalin E., Tice H.,
RA   Bruce D., Goodwin L., Pitluck S., Chertkov O., Brettin T., Detter J.C.,
RA   Han C., Kuske C.R., Schmutz J., Larimer F., Land M., Hauser L.,
RA   Kyrpides N., Mikhailova N., Marx C., Richardson P.;
RT   "Complete sequence of chromosome of Methylobacterium populi BJ001.";
RL   Submitted (APR-2008) to the EMBL/GenBank/DDBJ databases.
CC   -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC       {ECO:0000256|ARBA:ARBA00004752}.
CC   -!- SIMILARITY: Belongs to the YkuD family.
CC       {ECO:0000256|ARBA:ARBA00005992}.
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DR   EMBL; CP001029; ACB81030.1; -; Genomic_DNA.
DR   RefSeq; WP_012454750.1; NC_010725.1.
DR   AlphaFoldDB; B1ZEG6; -.
DR   STRING; 441620.Mpop_2875; -.
DR   KEGG; mpo:Mpop_2875; -.
DR   eggNOG; COG2989; Bacteria.
DR   HOGENOM; CLU_020360_2_0_5; -.
DR   OrthoDB; 9778545at2; -.
DR   UniPathway; UPA00219; -.
DR   Proteomes; UP000007136; Chromosome.
DR   GO; GO:0004180; F:carboxypeptidase activity; IEA:UniProt.
DR   GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR   CDD; cd16913; YkuD_like; 1.
DR   Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR   Gene3D; 1.10.101.10; PGBD-like superfamily/PGBD; 1.
DR   InterPro; IPR005490; LD_TPept_cat_dom.
DR   InterPro; IPR045380; LD_TPept_scaffold_dom.
DR   InterPro; IPR002477; Peptidoglycan-bd-like.
DR   InterPro; IPR036365; PGBD-like_sf.
DR   InterPro; IPR036366; PGBDSf.
DR   InterPro; IPR038063; Transpep_catalytic_dom.
DR   PANTHER; PTHR41533:SF2; BLR7131 PROTEIN; 1.
DR   PANTHER; PTHR41533; L,D-TRANSPEPTIDASE HI_1667-RELATED; 1.
DR   Pfam; PF01471; PG_binding_1; 1.
DR   Pfam; PF20142; Scaffold; 1.
DR   Pfam; PF03734; YkuD; 1.
DR   SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR   SUPFAM; SSF47090; PGBD-like; 1.
PE   3: Inferred from homology;
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   DOMAIN          138..275
FT                   /note="L,D-transpeptidase scaffold"
FT                   /evidence="ECO:0000259|Pfam:PF20142"
FT   DOMAIN          330..364
FT                   /note="Peptidoglycan binding-like"
FT                   /evidence="ECO:0000259|Pfam:PF01471"
FT   DOMAIN          396..536
FT                   /note="L,D-transpeptidase catalytic"
FT                   /evidence="ECO:0000259|Pfam:PF03734"
FT   REGION          56..111
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          601..662
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        78..111
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        616..642
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   662 AA;  69985 MW;  E0C47687310C2A01 CRC64;
     MRAASEAGTG VARTLSVGTL SVALAALLAF GHAPAGAEER AATESGIVIR KAAVDPADGP
     AVTPEATEGA APAAEAPAAE APSPPEEPAP ASAPVPAPAA EGPPAPVAPS EPLPAAVYAR
     LNDSTPLLQR LTGKDREAIQ AFYALGNFKP VWIENGAFSA AANAAIARLR EAGEDGLDPN
     AYPVPVVGKL SRPDTDAEIA EADLKLSASL ALYARDARGG RVNPAAISKL LTPTLDLPSA
     DAVLTRLVAA GAGAGDALQI YNPRQPGYLA LKKRLAGLRA GRTQGAPSVK LPDGPVLKLG
     MSDPRVPLLR SRFGLEKQAA GTLDAAPGEA DAYDGAVADA VKSFQRSRGL PASGTLTRAT
     VAALANPSVP KTAASEADLL VNMERWRWLP AELGPDYVFV NVPEFKLKVF RDGHLRDETR
     VIVGKPTSPT PIFSGMMEYA VVNPSWYVPP SILKQMLASG RTAGFEVVRR GKTISLRQPP
     GERNALGFIK FMFPNQHSVY LHDTPNRSLF SASTRAFSHG CVRVDDPFRF ADAVLPTWTE
     ERLKKLIGKG ERTLRLPEKL PVHLAYFTAE VDDLGSYRTL TDLYGYDGPM KAALGLAPRS
     EAVAKGPATA KRAAEATRTP PRRAASREAS RSERRAAPRR APDMFGEPEG GPVYAYPQRS
     FW
//