ID B5DG18_SALSA Unreviewed; 203 AA.
AC B5DG18;
DT 14-OCT-2008, integrated into UniProtKB/TrEMBL.
DT 14-OCT-2008, sequence version 1.
DT 27-MAR-2024, entry version 59.
DE SubName: Full=High mobility group protein B1 {ECO:0000313|RefSeq:NP_001133101.1};
DE SubName: Full=High-mobility group box 1 {ECO:0000313|EMBL:ACH70692.1};
GN Name=hmgb1 {ECO:0000313|EMBL:ACH70692.1,
GN ECO:0000313|RefSeq:NP_001133101.1};
OS Salmo salar (Atlantic salmon).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes;
OC Salmonidae; Salmoninae; Salmo.
OX NCBI_TaxID=8030 {ECO:0000313|EMBL:ACH70692.1};
RN [1] {ECO:0000313|EMBL:ACH70692.1, ECO:0000313|RefSeq:NP_001133101.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=White muscle {ECO:0000313|EMBL:ACH70692.1};
RX PubMed=19878547; DOI=10.1186/1471-2164-10-502;
RA Andreassen R., Lunner S., Hoyheim B.;
RT "Characterization of full-length sequenced cDNA inserts (FLIcs) from
RT Atlantic salmon (Salmo salar).";
RL BMC Genomics 10:502-502(2009).
RN [2] {ECO:0000313|RefSeq:NP_001133101.1}
RP IDENTIFICATION.
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
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DR EMBL; BT043577; ACH70692.1; -; mRNA.
DR RefSeq; NP_001133101.1; NM_001139629.1.
DR GeneID; 100194543; -.
DR KEGG; sasa:100194543; -.
DR OrthoDB; 1222485at2759; -.
DR Proteomes; UP000087266; Chromosome ssa04.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-UniRule.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd21978; HMG-box_HMGB_rpt1; 1.
DR CDD; cd21979; HMG-box_HMGB_rpt2; 1.
DR Gene3D; 1.10.30.10; High mobility group box domain; 2.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR PANTHER; PTHR48112:SF12; HIGH MOBILITY GROUP PROTEIN B1; 1.
DR PANTHER; PTHR48112; HIGH MOBILITY GROUP PROTEIN DSP1; 1.
DR Pfam; PF00505; HMG_box; 1.
DR Pfam; PF09011; HMG_box_2; 1.
DR PRINTS; PR00886; HIGHMOBLTY12.
DR SMART; SM00398; HMG; 2.
DR SUPFAM; SSF47095; HMG-box; 2.
DR PROSITE; PS50118; HMG_BOX_2; 2.
PE 2: Evidence at transcript level;
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Reference proteome {ECO:0000313|Proteomes:UP000087266}.
FT DOMAIN 8..78
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DOMAIN 94..162
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DNA_BIND 8..78
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT DNA_BIND 94..162
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT REGION 161..203
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 181..203
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 203 AA; 23372 MW; 3B9FC15B32C491E2 CRC64;
MGKDPRKPRG KMSSYAYFVQ TCREEHKKKH PEASVNFSEF SKKCSERWRT MSAKEKGKFE
DLAKLDKVRY EREMRSYIPP KGEKKKRFKD PNAPKRPSSA FFIFCADFRP QVKGETPGLS
IGDVAKKLGE KWNNLTAEDK VPYEKKAAKL KEKYEKDITA YRNKGKVPVS VPAKAAAPTK
DDDDDDDDDD DDEDDDDDDD DDE
//
