ID B5JMU1_9BACT Unreviewed; 539 AA.
AC B5JMU1;
DT 14-OCT-2008, integrated into UniProtKB/TrEMBL.
DT 14-OCT-2008, sequence version 1.
DT 27-MAR-2024, entry version 82.
DE SubName: Full=Sigma-54 interaction domain family {ECO:0000313|EMBL:EDY81810.1};
GN ORFNames=VDG1235_1428 {ECO:0000313|EMBL:EDY81810.1};
OS Verrucomicrobiae bacterium DG1235.
OC Bacteria; Verrucomicrobiota; Verrucomicrobiae.
OX NCBI_TaxID=382464 {ECO:0000313|EMBL:EDY81810.1, ECO:0000313|Proteomes:UP000003839};
RN [1] {ECO:0000313|EMBL:EDY81810.1, ECO:0000313|Proteomes:UP000003839}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DG1235 {ECO:0000313|EMBL:EDY81810.1,
RC ECO:0000313|Proteomes:UP000003839};
RA Hart M., Ferriera S., Johnson J., Kravitz S., Beeson K., Sutton G.,
RA Rogers Y.-H., Friedman R., Frazier M., Venter J.C.;
RL Submitted (JUL-2008) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; DS990592; EDY81810.1; -; Genomic_DNA.
DR AlphaFoldDB; B5JMU1; -.
DR STRING; 382464.VDG1235_1428; -.
DR eggNOG; COG3604; Bacteria.
DR HOGENOM; CLU_000445_95_2_0; -.
DR OrthoDB; 9802354at2; -.
DR Proteomes; UP000003839; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IEA:InterPro.
DR GO; GO:0043565; F:sequence-specific DNA binding; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd00009; AAA; 1.
DR Gene3D; 1.10.8.60; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR InterPro; IPR003593; AAA+_ATPase.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR002197; HTH_Fis.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR002078; Sigma_54_int.
DR InterPro; IPR025662; Sigma_54_int_dom_ATP-bd_1.
DR InterPro; IPR025943; Sigma_54_int_dom_ATP-bd_2.
DR PANTHER; PTHR32071; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR PANTHER; PTHR32071:SF117; TRANSCRIPTIONAL REGULATORY PROTEIN; 1.
DR Pfam; PF13185; GAF_2; 1.
DR Pfam; PF02954; HTH_8; 1.
DR Pfam; PF00158; Sigma54_activat; 1.
DR PRINTS; PR01590; HTHFIS.
DR SMART; SM00382; AAA; 1.
DR SMART; SM00065; GAF; 1.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR PROSITE; PS00675; SIGMA54_INTERACT_1; 1.
DR PROSITE; PS00676; SIGMA54_INTERACT_2; 1.
DR PROSITE; PS50045; SIGMA54_INTERACT_4; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000003839};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 227..456
FT /note="Sigma-54 factor interaction"
FT /evidence="ECO:0000259|PROSITE:PS50045"
FT COILED 190..217
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 539 AA; 60016 MW; 9FFC3A3595CDAAEA CRC64;
MQTVNCRVGE CSLAKEGPPL ELLNRATGVS CRSVQELGLL FSISQTLEKS LDLGDIVRPA
LRRMQGFIGL ERGTISILNR DTGGFLLAEA IGLPRGLPPA NYLDMIRPIL ERTVESRDPV
VITDLAVWAR KQGVEEDVLE SLRLADGVGM VSVPLKFDEE AIGTLSIERA NTNFGWESDL
RILGMIASIV AQAARVRRDA AEQIQSLRAE NERLQEEIAH GFRPENIIGS SSTMRSVYYH
IEQVANSATT VLIRGESGTG KELVAKALHE KSSRRNKPFV KFNCAALPDS IIESELFGHE
KGAFTGALAM RKGRFESANG GTIFLDEIGD ISLSTQVKLL RVLQEREFER VGSQETRRVD
VRVIAATSRN LEEMMEAGTF REDLYYRLNV FPIYMPPLRE RKCDILMLAD HFIEKFAKRM
GRKPIRISSA AIDMLVSYHW AGNVRELENC IERAVLLAKG QSIKAHHLPP TLQKKSRAES
SEVATLEDAI QALEREMIVD ALKETGSNLA EASRRLGLTE RKAGLRVKKY GIDVSRFKS
//
