ID B5X4G3_SALSA Unreviewed; 462 AA.
AC B5X4G3;
DT 25-NOV-2008, integrated into UniProtKB/TrEMBL.
DT 25-NOV-2008, sequence version 1.
DT 27-MAR-2024, entry version 63.
DE SubName: Full=Vimentin {ECO:0000313|EMBL:ACI34194.1, ECO:0000313|RefSeq:NP_001133947.1};
GN Name=VIME {ECO:0000313|EMBL:ACI34194.1};
GN Synonyms=vime {ECO:0000313|RefSeq:NP_001133947.1};
OS Salmo salar (Atlantic salmon).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes;
OC Salmonidae; Salmoninae; Salmo.
OX NCBI_TaxID=8030 {ECO:0000313|EMBL:ACI34194.1};
RN [1] {ECO:0000313|EMBL:ACI34194.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Brain {ECO:0000313|EMBL:ACI34194.1};
RG cGRASP (B.F. Koop & W.S. Davidson);
RA Leong J., von Schalburg K., Cooper G., Moore R., Holt R., Davidson W.S.,
RA Koop B.F.;
RL Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ACI34194.1, ECO:0000313|RefSeq:NP_001133947.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Brain {ECO:0000313|EMBL:ACI34194.1};
RX PubMed=20433749; DOI=10.1186/1471-2164-11-279;
RA Leong J.S., Jantzen S.G., von Schalburg K.R., Cooper G.A., Messmer A.M.,
RA Liao N.Y., Munro S., Moore R., Holt R.A., Jones S.J., Davidson W.S.,
RA Koop B.F.;
RT "Salmo salar and Esox lucius full-length cDNA sequences reveal changes in
RT evolutionary pressures on a post-tetraploidization genome.";
RL BMC Genomics 11:279-279(2010).
RN [3] {ECO:0000313|EMBL:ACI34194.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Brain {ECO:0000313|EMBL:ACI34194.1};
RG cGRASP (B.F. Koop & W.S. Davidson);
RL Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|RefSeq:NP_001133947.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=22057848;
RA Sagstad A., Grotmol S., Kryvi H., Krossoy C., Totland G.K., Malde K.,
RA Wang S., Hansen T., Wargelius A.;
RT "Identification of vimentin- and elastin-like transcripts specifically
RT expressed in developing notochord of Atlantic salmon (Salmo salar L.).";
RL Cell Tissue Res. 346:191-202(2011).
RN [5] {ECO:0000313|RefSeq:NP_001133947.1}
RP IDENTIFICATION.
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- FUNCTION: Vimentins are class-III intermediate filaments found in
CC various non-epithelial cells, especially mesenchymal cells. Vimentin is
CC attached to the nucleus, endoplasmic reticulum, and mitochondria,
CC either laterally or terminally. {ECO:0000256|ARBA:ARBA00002825}.
CC -!- SIMILARITY: Belongs to the intermediate filament family.
CC {ECO:0000256|RuleBase:RU000685}.
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DR EMBL; BT045932; ACI34194.1; -; mRNA.
DR RefSeq; NP_001133947.1; NM_001140475.1.
DR STRING; 8030.ENSSSAP00000096483; -.
DR PaxDb; 8030-ENSSSAP00000096483; -.
DR Ensembl; ENSSSAT00000130855; ENSSSAP00000096483; ENSSSAG00000073113.
DR GeneID; 100195446; -.
DR KEGG; sasa:100195446; -.
DR CTD; 7431; -.
DR OMA; GGMYATK; -.
DR OrthoDB; 4640531at2759; -.
DR Proteomes; UP000087266; Chromosome ssa19.
DR Bgee; ENSSSAG00000073113; Expressed in camera-type eye and 15 other cell types or tissues.
DR GO; GO:0005882; C:intermediate filament; IEA:UniProtKB-KW.
DR Gene3D; 1.20.5.170; -; 1.
DR Gene3D; 1.20.5.500; Single helix bin; 1.
DR Gene3D; 1.20.5.1160; Vasodilator-stimulated phosphoprotein; 1.
DR InterPro; IPR018039; IF_conserved.
DR InterPro; IPR039008; IF_rod_dom.
DR InterPro; IPR006821; Intermed_filament_DNA-bd.
DR PANTHER; PTHR45652; GLIAL FIBRILLARY ACIDIC PROTEIN; 1.
DR PANTHER; PTHR45652:SF5; VIMENTIN; 1.
DR Pfam; PF00038; Filament; 1.
DR Pfam; PF04732; Filament_head; 1.
DR SMART; SM01391; Filament; 1.
DR SUPFAM; SSF64593; Intermediate filament protein, coiled coil region; 2.
DR PROSITE; PS00226; IF_ROD_1; 1.
DR PROSITE; PS51842; IF_ROD_2; 1.
PE 2: Evidence at transcript level;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Intermediate filament {ECO:0000256|ARBA:ARBA00022754,
KW ECO:0000256|RuleBase:RU000685};
KW Reference proteome {ECO:0000313|Proteomes:UP000087266}.
FT DOMAIN 100..408
FT /note="IF rod"
FT /evidence="ECO:0000259|PROSITE:PS51842"
FT REGION 1..52
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 90..241
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 295..386
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 1..17
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 31..52
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 462 AA; 53461 MW; 024A9C7AD7D84FC8 CRC64;
MNRTTNRQTT SSSSYKRMFG GEGRPGVGMA RSTLSSRQYS SPVRSSRMSY SVSSAPPSIY
ASKNIRLRSS APMPRLSSET VDFALSDAIN SEFKANRTNE KAEMQHLNDR FASYIDKVRF
LEQQNKILLA ELEQLKGKGA SRIGDLYEDE MRDLRRQVDQ LTNEKAHVEV DRDNLGEDIE
RLREKLQDEM IQKEEAEHNL QSFRQDVDNA SLARLDLERK VESLQEEILF LRKLHDEEVA
ELQAQIQDHH VQIDMDVAKP DLTAALRDVR VQYETLASRN LQESEDWYKS KFADLSEAAN
RNTDAIRQAK QEANEYRRQV QALTCEVDSL KGTNESMERQ MRELEESFGC EANNFQDTIS
RLEDDIRNMK DEMARHLREY QDLLNVKMAL DIEIATYRKL LEGEESRITT PMPNFSSFNL
RESMLEARPM IDNMSKKVVI KTIETRDGHV INESTQNHDD LE
//
