ID   B5ZRL8_RHILW            Unreviewed;       636 AA.
AC   B5ZRL8;
DT   25-NOV-2008, integrated into UniProtKB/TrEMBL.
DT   25-NOV-2008, sequence version 1.
DT   27-MAR-2024, entry version 92.
DE   SubName: Full=Peptidoglycan-binding domain 1 protein {ECO:0000313|EMBL:ACI55299.1};
DE   Flags: Precursor;
GN   OrderedLocusNames=Rleg2_2015 {ECO:0000313|EMBL:ACI55299.1};
OS   Rhizobium leguminosarum bv. trifolii (strain WSM2304).
OC   Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC   Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.
OX   NCBI_TaxID=395492 {ECO:0000313|EMBL:ACI55299.1, ECO:0000313|Proteomes:UP000008330};
RN   [1] {ECO:0000313|EMBL:ACI55299.1, ECO:0000313|Proteomes:UP000008330}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=WSM2304 {ECO:0000313|EMBL:ACI55299.1,
RC   ECO:0000313|Proteomes:UP000008330};
RX   PubMed=21304679; DOI=10.4056/sigs.44642;
RA   Reeve W., O'Hara G., Chain P., Ardley J., Brau L., Nandesena K., Tiwari R.,
RA   Malfatti S., Kiss H., Lapidus A., Copeland A., Nolan M., Land M.,
RA   Ivanova N., Mavromatis K., Markowitz V., Kyrpides N., Melino V., Denton M.,
RA   Yates R., Howieson J.;
RT   "Complete genome sequence of Rhizobium leguminosarum bv trifolii strain
RT   WSM2304, an effective microsymbiont of the South American clover Trifolium
RT   polymorphum.";
RL   Stand. Genomic Sci. 2:66-76(2010).
CC   -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC       {ECO:0000256|ARBA:ARBA00004752}.
CC   -!- SIMILARITY: Belongs to the YkuD family.
CC       {ECO:0000256|ARBA:ARBA00005992}.
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DR   EMBL; CP001191; ACI55299.1; -; Genomic_DNA.
DR   RefSeq; WP_012557872.1; NC_011369.1.
DR   AlphaFoldDB; B5ZRL8; -.
DR   STRING; 395492.Rleg2_2015; -.
DR   KEGG; rlt:Rleg2_2015; -.
DR   eggNOG; COG2989; Bacteria.
DR   HOGENOM; CLU_020360_2_0_5; -.
DR   UniPathway; UPA00219; -.
DR   Proteomes; UP000008330; Chromosome.
DR   GO; GO:0004180; F:carboxypeptidase activity; IEA:UniProt.
DR   GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR   CDD; cd16913; YkuD_like; 1.
DR   Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR   Gene3D; 1.10.101.10; PGBD-like superfamily/PGBD; 1.
DR   InterPro; IPR005490; LD_TPept_cat_dom.
DR   InterPro; IPR045380; LD_TPept_scaffold_dom.
DR   InterPro; IPR002477; Peptidoglycan-bd-like.
DR   InterPro; IPR036365; PGBD-like_sf.
DR   InterPro; IPR036366; PGBDSf.
DR   InterPro; IPR038063; Transpep_catalytic_dom.
DR   PANTHER; PTHR41533:SF2; BLR7131 PROTEIN; 1.
DR   PANTHER; PTHR41533; L,D-TRANSPEPTIDASE HI_1667-RELATED; 1.
DR   Pfam; PF01471; PG_binding_1; 1.
DR   Pfam; PF20142; Scaffold; 1.
DR   Pfam; PF03734; YkuD; 1.
DR   SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR   SUPFAM; SSF47090; PGBD-like; 1.
PE   3: Inferred from homology;
KW   Signal {ECO:0000256|SAM:SignalP};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   SIGNAL          1..28
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT   CHAIN           29..636
FT                   /evidence="ECO:0000256|SAM:SignalP"
FT                   /id="PRO_5002841731"
FT   DOMAIN          141..281
FT                   /note="L,D-transpeptidase scaffold"
FT                   /evidence="ECO:0000259|Pfam:PF20142"
FT   DOMAIN          342..375
FT                   /note="Peptidoglycan binding-like"
FT                   /evidence="ECO:0000259|Pfam:PF01471"
FT   DOMAIN          405..566
FT                   /note="L,D-transpeptidase catalytic"
FT                   /evidence="ECO:0000259|Pfam:PF03734"
SQ   SEQUENCE   636 AA;  68617 MW;  5CD2E8A13496DBF7 CRC64;
     MTFVLKSAAS ALAISCGVAA MSAAPAHAYT LMDMLRGDKQ RTQSTIFMDQ APGRPVPRGA
     VGGSLGGLDP EAPLPKVSGP RYYTYKAETL QFVDTGKFAD PVVTGAVADV SASGDASAEP
     AVQRRFLAQA KVRANADVAK VLEAYYGDSR NPLVWVDGNQ INDRAKSAMA TLADAASVGL
     DPADYAVQAP AIDPANPDPT FRDRALTQFE LELSAKVLAF VQDTVRGRID PNKISGYHDF
     QRKAVNLTSV LKLARMSPDV GAYIASRSPD GAQFEALKAE LAKLRAVDGG NEERIVVSLD
     KSLKPGDSSP EIANIVKAIG KHGSETLKTD HAATLAAYAG STDYSPDIVS LVEAFQQERG
     LKADGVIGQA TVRAMTGGDT NASKIDKLVV AMEQARWLPE DLGSRYVMIN QPAFMVYYHN
     DGKEQLSMRV VVGGKNNQTY FFDDEIETVE FNPFWGVPQS IIINEMLPKL RSDPNYLDQL
     GYEVEVNGHA VASSSVDWYG STNNVSVRQP PSSDNALGEL KILFPNSHAI YMHDTPSKSF
     FKRDMRALSH GCVRLANPRA MAAAVLGTTV DDVAKQIATG QNHAVKVPQK IPVYVSYFTA
     WPNKDGVVEY FDDVYGRDGY VDKAFDATTK ARGAQI
//