ID B6ISK3_RHOCS Unreviewed; 422 AA.
AC B6ISK3;
DT 16-DEC-2008, integrated into UniProtKB/TrEMBL.
DT 16-DEC-2008, sequence version 1.
DT 27-MAR-2024, entry version 83.
DE SubName: Full=Diaminopimelate decarboxylase, putative {ECO:0000313|EMBL:ACI98439.1};
DE EC=4.1.1.20 {ECO:0000313|EMBL:ACI98439.1};
GN OrderedLocusNames=RC1_1016 {ECO:0000313|EMBL:ACI98439.1};
OS Rhodospirillum centenum (strain ATCC 51521 / SW).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodospirillales;
OC Rhodospirillaceae; Rhodospirillum.
OX NCBI_TaxID=414684 {ECO:0000313|EMBL:ACI98439.1, ECO:0000313|Proteomes:UP000001591};
RN [1] {ECO:0000313|Proteomes:UP000001591}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 51521 / SW {ECO:0000313|Proteomes:UP000001591};
RA Touchman J.W., Bauer C., Blankenship R.E.;
RT "Genome sequence of Rhodospirillum centenum.";
RL Submitted (MAR-2007) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ACI98439.1, ECO:0000313|Proteomes:UP000001591}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ATCC 51521 / SW {ECO:0000313|Proteomes:UP000001591};
RX PubMed=20500872; DOI=10.1186/1471-2164-11-325;
RA Lu Y.K., Marden J., Han M., Swingley W.D., Mastrian S.D., Chowdhury S.R.,
RA Hao J., Helmy T., Kim S., Kurdoglu A.A., Matthies H.J., Rollo D.,
RA Stothard P., Blankenship R.E., Bauer C.E., Touchman J.W.;
RT "Metabolic flexibility revealed in the genome of the cyst-forming alpha-1
RT proteobacterium Rhodospirillum centenum.";
RL BMC Genomics 11:325-325(2010).
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000256|ARBA:ARBA00001933};
CC -!- SIMILARITY: Belongs to the Orn/Lys/Arg decarboxylase class-II family.
CC {ECO:0000256|RuleBase:RU003737}.
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DR EMBL; CP000613; ACI98439.1; -; Genomic_DNA.
DR RefSeq; WP_012566228.1; NC_011420.2.
DR AlphaFoldDB; B6ISK3; -.
DR STRING; 414684.RC1_1016; -.
DR KEGG; rce:RC1_1016; -.
DR eggNOG; COG0019; Bacteria.
DR HOGENOM; CLU_026444_0_2_5; -.
DR OrthoDB; 9802241at2; -.
DR Proteomes; UP000001591; Chromosome.
DR GO; GO:0008836; F:diaminopimelate decarboxylase activity; IEA:UniProtKB-EC.
DR GO; GO:0009089; P:lysine biosynthetic process via diaminopimelate; IEA:InterPro.
DR CDD; cd06828; PLPDE_III_DapDC; 1.
DR Gene3D; 3.20.20.10; Alanine racemase; 1.
DR InterPro; IPR009006; Ala_racemase/Decarboxylase_C.
DR InterPro; IPR002986; DAP_deCOOHase_LysA.
DR InterPro; IPR022643; De-COase2_C.
DR InterPro; IPR022644; De-COase2_N.
DR InterPro; IPR022653; De-COase2_pyr-phos_BS.
DR InterPro; IPR000183; Orn/DAP/Arg_de-COase.
DR InterPro; IPR029066; PLP-binding_barrel.
DR PANTHER; PTHR43727; DIAMINOPIMELATE DECARBOXYLASE; 1.
DR PANTHER; PTHR43727:SF2; DIAMINOPIMELATE DECARBOXYLASE 1, CHLOROPLASTIC-RELATED; 1.
DR Pfam; PF02784; Orn_Arg_deC_N; 1.
DR Pfam; PF00278; Orn_DAP_Arg_deC; 1.
DR PRINTS; PR01181; DAPDCRBXLASE.
DR PRINTS; PR01179; ODADCRBXLASE.
DR SUPFAM; SSF50621; Alanine racemase C-terminal domain-like; 1.
DR SUPFAM; SSF51419; PLP-binding barrel; 1.
DR PROSITE; PS00878; ODR_DC_2_1; 1.
PE 3: Inferred from homology;
KW Lyase {ECO:0000313|EMBL:ACI98439.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000001591}.
FT DOMAIN 65..302
FT /note="Orn/DAP/Arg decarboxylase 2 N-terminal"
FT /evidence="ECO:0000259|Pfam:PF02784"
FT DOMAIN 303..400
FT /note="Orn/DAP/Arg decarboxylase 2 C-terminal"
FT /evidence="ECO:0000259|Pfam:PF00278"
SQ SEQUENCE 422 AA; 45648 MW; 0C00A23EF1AA9908 CRC64;
MTPDALAATS AAALPCAPAL WWERPDLRYV GRDLHLAGRN LAELARQAGT PAYVYSGPRV
LENLRRLKAA LESTGLPHAI RYAMKANRHG PLLTWMKASG LCGIDACSPN ELRFAVQCGF
RPEEVSYTAT SVSEADLAVL ARHPETWVNA DSLSTLRRLA AVSPGREIGI RVNPALGVGY
GENQLLRYSG ERTSKFGIYR DRFEEALALA ASHGLTVRGI HFHVGWGYLN AQLPAWAEVV
RECLWFLDRV PQARLVNLGG GLGVPHAAGD RPLDLEAWAA VIRDSFAGRG IEVWVEPGDY
VVKDAGVLLL QANTVERKRA TTFVGVDGGF NLAVEPVFYR LPCEPVPARL HQDPARAWAA
DALAPVSIAG NINEALDLWA EALPFPAVEE GDVIAFLNAG GYAAAMGSNH CMRAQASEHL
LL
//
