ID B6K4Z1_SCHJY Unreviewed; 871 AA.
AC B6K4Z1;
DT 16-DEC-2008, integrated into UniProtKB/TrEMBL.
DT 16-DEC-2008, sequence version 1.
DT 27-MAR-2024, entry version 63.
DE SubName: Full=RNA-binding protein Snd1 {ECO:0000313|EMBL:EEB08548.1};
GN Name=snd1 {ECO:0000313|JaponicusDB:SJAG_03706};
GN ORFNames=SJAG_03706 {ECO:0000313|EMBL:EEB08548.1};
OS Schizosaccharomyces japonicus (strain yFS275 / FY16936) (Fission yeast).
OC Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina;
OC Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae;
OC Schizosaccharomyces.
OX NCBI_TaxID=402676 {ECO:0000313|EMBL:EEB08548.1, ECO:0000313|Proteomes:UP000001744};
RN [1] {ECO:0000313|EMBL:EEB08548.1, ECO:0000313|Proteomes:UP000001744}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=yFS275 / FY16936 {ECO:0000313|Proteomes:UP000001744};
RX PubMed=21511999; DOI=10.1126/science.1203357;
RA Rhind N., Chen Z., Yassour M., Thompson D.A., Haas B.J., Habib N.,
RA Wapinski I., Roy S., Lin M.F., Heiman D.I., Young S.K., Furuya K., Guo Y.,
RA Pidoux A., Chen H.M., Robbertse B., Goldberg J.M., Aoki K., Bayne E.H.,
RA Berlin A.M., Desjardins C.A., Dobbs E., Dukaj L., Fan L., FitzGerald M.G.,
RA French C., Gujja S., Hansen K., Keifenheim D., Levin J.Z., Mosher R.A.,
RA Mueller C.A., Pfiffner J., Priest M., Russ C., Smialowska A., Swoboda P.,
RA Sykes S.M., Vaughn M., Vengrova S., Yoder R., Zeng Q., Allshire R.,
RA Baulcombe D., Birren B.W., Brown W., Ekwall K., Kellis M., Leatherwood J.,
RA Levin H., Margalit H., Martienssen R., Nieduszynski C.A., Spatafora J.W.,
RA Friedman N., Dalgaard J.Z., Baumann P., Niki H., Regev A., Nusbaum C.;
RT "Comparative functional genomics of the fission yeasts.";
RL Science 332:930-936(2011).
CC -!- SUBCELLULAR LOCATION: Cytoplasm {ECO:0000256|PIRNR:PIRNR017179}.
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DR EMBL; KE651167; EEB08548.1; -; Genomic_DNA.
DR RefSeq; XP_002174841.1; XM_002174805.2.
DR AlphaFoldDB; B6K4Z1; -.
DR STRING; 402676.B6K4Z1; -.
DR EnsemblFungi; EEB08548; EEB08548; SJAG_03706.
DR GeneID; 7052222; -.
DR JaponicusDB; SJAG_03706; snd1.
DR VEuPathDB; FungiDB:SJAG_03706; -.
DR eggNOG; KOG2039; Eukaryota.
DR HOGENOM; CLU_005966_1_0_1; -.
DR OMA; EKTCCTV; -.
DR OrthoDB; 375531at2759; -.
DR Proteomes; UP000001744; Unassembled WGS sequence.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0016442; C:RISC complex; IEA:UniProtKB-UniRule.
DR GO; GO:0004518; F:nuclease activity; IBA:GO_Central.
DR GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR GO; GO:0006402; P:mRNA catabolic process; IBA:GO_Central.
DR GO; GO:0031047; P:regulatory ncRNA-mediated gene silencing; IEA:InterPro.
DR CDD; cd00175; SNc; 2.
DR Gene3D; 2.30.30.140; -; 1.
DR Gene3D; 2.40.50.90; -; 5.
DR InterPro; IPR016685; Silence_cplx_Nase-comp_TudorSN.
DR InterPro; IPR035437; SNase_OB-fold_sf.
DR InterPro; IPR016071; Staphylococal_nuclease_OB-fold.
DR InterPro; IPR002999; Tudor.
DR PANTHER; PTHR12302; EBNA2 BINDING PROTEIN P100; 1.
DR PANTHER; PTHR12302:SF2; STAPHYLOCOCCAL NUCLEASE DOMAIN-CONTAINING PROTEIN 1; 1.
DR Pfam; PF00565; SNase; 5.
DR Pfam; PF00567; TUDOR; 1.
DR PIRSF; PIRSF017179; RISC-Tudor-SN; 1.
DR SMART; SM00318; SNc; 4.
DR SMART; SM00333; TUDOR; 1.
DR SUPFAM; SSF50199; Staphylococcal nuclease; 5.
DR SUPFAM; SSF63748; Tudor/PWWP/MBT; 1.
DR PROSITE; PS50830; TNASE_3; 4.
DR PROSITE; PS50304; TUDOR; 1.
PE 4: Predicted;
KW Cytoplasm {ECO:0000256|PIRNR:PIRNR017179};
KW Reference proteome {ECO:0000313|Proteomes:UP000001744};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT DOMAIN 9..141
FT /note="TNase-like"
FT /evidence="ECO:0000259|PROSITE:PS50830"
FT DOMAIN 166..307
FT /note="TNase-like"
FT /evidence="ECO:0000259|PROSITE:PS50830"
FT DOMAIN 321..459
FT /note="TNase-like"
FT /evidence="ECO:0000259|PROSITE:PS50830"
FT DOMAIN 488..619
FT /note="TNase-like"
FT /evidence="ECO:0000259|PROSITE:PS50830"
FT DOMAIN 689..749
FT /note="Tudor"
FT /evidence="ECO:0000259|PROSITE:PS50304"
SQ SEQUENCE 871 AA; 96401 MW; D81952EE4654A2DB CRC64;
MSTLGSVFVK SAVSGDTLNV LVKKSPNQIL ERTVSLAYIE CPRFKREGDD PFAFEAQDFV
RKAIVGKPVQ LTISYIVPST QREYGRISFK GEDLTTALLD AGLAKLRPEA RKRDDGPDSY
HAILQKAEEV AQHKKLGIWG PANAAVNTSQ TDPLKPAAYL QAHKTEKINA IITQVRDGDN
FRVRLLMKPK QHQFITLALA GVRCPRSKRY GNNETEAEPF GDAAKSFVES RLLQRNVIVE
LLGLAPNNIT FIGRVLHPAG NIATVLLSAG LARVADYHGS ILGADAMGKL RQIERQAKVE
NKGMWKDASF VNTAMDKSNA NDYEAVVTRV ISSDSLEIAK ADGTEKRIQL SSVRHPRPAV
EKESSYQLEA REFLRKKLIG KQVTVSTDFV RPGQNGLPPV DACTVTLPDG TNAAMLVVEN
GYASVVRHRR EDLDRSPLYD HLLETEARAQ QAKKGMWSGK KSALKEPVNA SESVVRSRQY
LPSLQKSKRL SAVIEFVVSG SRFRCYSQKE NCNFAIACAG IRTPRYNKTE NSERCGEEAY
NVSKPLLQKD VELEILSVDN SGCFIGNIYT SRNDSIAEVL LEKGLAWSQG YPNQSNVQRT
VYDEAEQRAK AQRIGLWENY VEPTEKQTVK TTDTDTASKG KTYVDVVLSD IGDEGKFSFQ
IVGDEVKQLE GLMKSLAAYK ANAQSLDGQI KVGANIAALS SYDNAMYRAR ILRCDRDNNI
ADVVLYDYGS VEQIPFKNLF SLPENYRVLK PQAHTATLTF VQFPSTGSDY ADDAKATLHK
LTANKQFVAC IDGENNNVLS VTLIDPQVGS DFEQSINAQL VEEGVASLLP KKKRSILGDP
ALLEALTELQ ENARRSHIGM WTYGDPLDYE D
//
