ID B6SGH0_MAIZE Unreviewed; 488 AA.
AC B6SGH0;
DT 16-DEC-2008, integrated into UniProtKB/TrEMBL.
DT 16-DEC-2008, sequence version 1.
DT 24-JAN-2024, entry version 78.
DE SubName: Full=Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:AQK98787.1};
GN Name=100274616 {ECO:0000313|EnsemblPlants:Zm00001eb365120_P001};
GN ORFNames=ZEAMMB73_Zm00001d012097 {ECO:0000313|EMBL:AQK98787.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACG23953.1};
RN [1] {ECO:0000313|EMBL:ACG23953.1}
RP NUCLEOTIDE SEQUENCE.
RX PubMed=18937034; DOI=10.1007/s11103-008-9415-4;
RA Alexandrov N.N., Brover V.V., Freidin S., Troukhan M.E., Tatarinova T.V.,
RA Zhang H., Swaller T.J., Lu Y.P., Bouck J., Flavell R.B., Feldmann K.A.;
RT "Insights into corn genes derived from large-scale cDNA sequencing.";
RL Plant Mol. Biol. 69:179-194(2009).
RN [2] {ECO:0000313|EMBL:ACL53447.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=B73 {ECO:0000313|EMBL:ACL53447.1};
RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740;
RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J.,
RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., Fernandes J.,
RA Walbot V., Yu Y.;
RT "Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.";
RL PLoS Genet. 5:E1000740-E1000740(2009).
RN [3] {ECO:0000313|EnsemblPlants:Zm00001eb365120_P001, ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb365120_P001,
RC ECO:0000313|Proteomes:UP000007305};
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., Abbott R.M.,
RA Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., Gillam B.,
RA Chen W., Yan L., Higginbotham J., Cardenas M., Waligorski J., Applebaum E.,
RA Phelps L., Falcone J., Kanchi K., Thane T., Scimone A., Thane N., Henke J.,
RA Wang T., Ruppert J., Shah N., Rotter K., Hodges J., Ingenthron E.,
RA Cordes M., Kohlberg S., Sgro J., Delgado B., Mead K., Chinwalla A.,
RA Leonard S., Crouse K., Collura K., Kudrna D., Currie J., He R.,
RA Angelova A., Rajasekar S., Mueller T., Lomeli R., Scara G., Ko A.,
RA Delaney K., Wissotski M., Lopez G., Campos D., Braidotti M., Ashley E.,
RA Golser W., Kim H., Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A.,
RA Fan C., Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., Jeddeloh J.A.,
RA Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., Nagel D.H., McCann M.C.,
RA SanMiguel P., Myers A.M., Nettleton D., Nguyen J., Penning B.W.,
RA Ponnala L., Schneider K.L., Schwartz D.C., Sharma A., Soderlund C.,
RA Springer N.M., Sun Q., Wang H., Waterman M., Westerman R., Wolfgruber T.K.,
RA Yang L., Yu Y., Zhang L., Zhou S., Zhu Q., Bennetzen J.L., Dawe R.K.,
RA Jiang J., Jiang N., Presting G.G., Wessler S.R., Aluru S.,
RA Martienssen R.A., Clifton S.W., McCombie W.R., Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [4] {ECO:0000313|EMBL:AQK98787.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Seedling {ECO:0000313|EMBL:AQK98787.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [5] {ECO:0000313|EnsemblPlants:Zm00001eb365120_P001}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb365120_P001};
RG EnsemblPlants;
RL Submitted (MAY-2021) to UniProtKB.
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DR EMBL; EU951835; ACG23953.1; -; mRNA.
DR EMBL; BT054840; ACL53447.1; -; mRNA.
DR EMBL; CM000784; AQK98787.1; -; Genomic_DNA.
DR RefSeq; NP_001142432.1; NM_001148960.1.
DR RefSeq; XP_008654667.1; XM_008656445.1.
DR AlphaFoldDB; B6SGH0; -.
DR SMR; B6SGH0; -.
DR STRING; 4577.B6SGH0; -.
DR PaxDb; 4577-AC183950-2_FGP005; -.
DR EnsemblPlants; Zm00001eb365120_T001; Zm00001eb365120_P001; Zm00001eb365120.
DR EnsemblPlants; Zm00001eb365120_T002; Zm00001eb365120_P002; Zm00001eb365120.
DR EnsemblPlants; Zm00001eb365120_T003; Zm00001eb365120_P003; Zm00001eb365120.
DR EnsemblPlants; Zm00001eb365120_T004; Zm00001eb365120_P004; Zm00001eb365120.
DR GeneID; 100274616; -.
DR Gramene; Zm00001eb365120_T001; Zm00001eb365120_P001; Zm00001eb365120.
DR Gramene; Zm00001eb365120_T002; Zm00001eb365120_P002; Zm00001eb365120.
DR Gramene; Zm00001eb365120_T003; Zm00001eb365120_P003; Zm00001eb365120.
DR Gramene; Zm00001eb365120_T004; Zm00001eb365120_P004; Zm00001eb365120.
DR KEGG; zma:100274616; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_028941_1_0_1; -.
DR InParanoid; B6SGH0; -.
DR OMA; CRFSEAT; -.
DR OrthoDB; 404661at2759; -.
DR Proteomes; UP000007305; Chromosome 8.
DR ExpressionAtlas; B6SGH0; baseline.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 5.
DR PANTHER; PTHR47941; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL; 1.
DR PANTHER; PTHR47941:SF22; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL; 1.
DR Pfam; PF13041; PPR_2; 2.
DR Pfam; PF13812; PPR_3; 1.
DR PROSITE; PS51375; PPR; 6.
PE 2: Evidence at transcript level;
KW Reference proteome {ECO:0000313|Proteomes:UP000007305};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT REPEAT 228..262
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 263..297
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 298..332
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 370..404
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 405..439
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 440..474
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ SEQUENCE 488 AA; 53364 MW; 56CDC225EDFBF491 CRC64;
MAASRRLARK LPSLISRYER LISPETDAPE LTEAPTTSAS IPFDPSLPVL PLAVSHLSPP
NPLPVLPSAH ASSPASLFRL LRRARHHPRL VALDLHILLA AADASSAFRP DHSLTSLVAA
RLAASRRLPS LQRLLELVLT RPCPCADDSI FACPELLPTF RKAIVAFAAS GDIPSASHAL
ASLRRVADSP LPAEFYNIIL QALSRLRRHD DAIRFYGEMT SVYRVAPDVH TFNILISSSC
RVEGVDAAMR WFGEMQRRSC APTVVSFNTL MRGFIREGRY KEGTKVAREM LELGVGLSVA
SMEILIGGLC RGSKALEAAE LFVEFLGDGV VPEGFDCFEV VEALCRGGKV DRAVEAVDMV
LERNTKCCMS APAGATVLEC LMEAGKLDEV YRLMWRMIDQ GIVPDSISCN CIFEALCEAG
RTADANQLRV FAKEKGFEAD GETYRMLVQG FGRQGKRKEG KAVLDEMLDL GFIPNIASYN
RLLGGLHK
//