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Database: UniProt
Entry: B6SGH0_MAIZE
LinkDB: B6SGH0_MAIZE
Original site: B6SGH0_MAIZE 
ID   B6SGH0_MAIZE            Unreviewed;       488 AA.
AC   B6SGH0;
DT   16-DEC-2008, integrated into UniProtKB/TrEMBL.
DT   16-DEC-2008, sequence version 1.
DT   24-JAN-2024, entry version 78.
DE   SubName: Full=Pentatricopeptide repeat-containing protein {ECO:0000313|EMBL:AQK98787.1};
GN   Name=100274616 {ECO:0000313|EnsemblPlants:Zm00001eb365120_P001};
GN   ORFNames=ZEAMMB73_Zm00001d012097 {ECO:0000313|EMBL:AQK98787.1};
OS   Zea mays (Maize).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC   Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX   NCBI_TaxID=4577 {ECO:0000313|EMBL:ACG23953.1};
RN   [1] {ECO:0000313|EMBL:ACG23953.1}
RP   NUCLEOTIDE SEQUENCE.
RX   PubMed=18937034; DOI=10.1007/s11103-008-9415-4;
RA   Alexandrov N.N., Brover V.V., Freidin S., Troukhan M.E., Tatarinova T.V.,
RA   Zhang H., Swaller T.J., Lu Y.P., Bouck J., Flavell R.B., Feldmann K.A.;
RT   "Insights into corn genes derived from large-scale cDNA sequencing.";
RL   Plant Mol. Biol. 69:179-194(2009).
RN   [2] {ECO:0000313|EMBL:ACL53447.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=B73 {ECO:0000313|EMBL:ACL53447.1};
RX   PubMed=19936069; DOI=10.1371/journal.pgen.1000740;
RA   Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J.,
RA   Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., Fernandes J.,
RA   Walbot V., Yu Y.;
RT   "Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.";
RL   PLoS Genet. 5:E1000740-E1000740(2009).
RN   [3] {ECO:0000313|EnsemblPlants:Zm00001eb365120_P001, ECO:0000313|Proteomes:UP000007305}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb365120_P001,
RC   ECO:0000313|Proteomes:UP000007305};
RX   PubMed=19965430; DOI=10.1126/science.1178534;
RA   Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA   Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA   Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA   Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., Abbott R.M.,
RA   Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., Gillam B.,
RA   Chen W., Yan L., Higginbotham J., Cardenas M., Waligorski J., Applebaum E.,
RA   Phelps L., Falcone J., Kanchi K., Thane T., Scimone A., Thane N., Henke J.,
RA   Wang T., Ruppert J., Shah N., Rotter K., Hodges J., Ingenthron E.,
RA   Cordes M., Kohlberg S., Sgro J., Delgado B., Mead K., Chinwalla A.,
RA   Leonard S., Crouse K., Collura K., Kudrna D., Currie J., He R.,
RA   Angelova A., Rajasekar S., Mueller T., Lomeli R., Scara G., Ko A.,
RA   Delaney K., Wissotski M., Lopez G., Campos D., Braidotti M., Ashley E.,
RA   Golser W., Kim H., Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A.,
RA   Fan C., Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA   Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA   Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA   Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA   Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA   Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., Jeddeloh J.A.,
RA   Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., Nagel D.H., McCann M.C.,
RA   SanMiguel P., Myers A.M., Nettleton D., Nguyen J., Penning B.W.,
RA   Ponnala L., Schneider K.L., Schwartz D.C., Sharma A., Soderlund C.,
RA   Springer N.M., Sun Q., Wang H., Waterman M., Westerman R., Wolfgruber T.K.,
RA   Yang L., Yu Y., Zhang L., Zhou S., Zhu Q., Bennetzen J.L., Dawe R.K.,
RA   Jiang J., Jiang N., Presting G.G., Wessler S.R., Aluru S.,
RA   Martienssen R.A., Clifton S.W., McCombie W.R., Wing R.A., Wilson R.K.;
RT   "The B73 maize genome: complexity, diversity, and dynamics.";
RL   Science 326:1112-1115(2009).
RN   [4] {ECO:0000313|EMBL:AQK98787.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Seedling {ECO:0000313|EMBL:AQK98787.1};
RG   Maize Genome Sequencing Project;
RA   Ware D.;
RT   "Update maize B73 reference genome by single molecule sequencing
RT   technologies.";
RL   Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN   [5] {ECO:0000313|EnsemblPlants:Zm00001eb365120_P001}
RP   IDENTIFICATION.
RC   STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb365120_P001};
RG   EnsemblPlants;
RL   Submitted (MAY-2021) to UniProtKB.
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DR   EMBL; EU951835; ACG23953.1; -; mRNA.
DR   EMBL; BT054840; ACL53447.1; -; mRNA.
DR   EMBL; CM000784; AQK98787.1; -; Genomic_DNA.
DR   RefSeq; NP_001142432.1; NM_001148960.1.
DR   RefSeq; XP_008654667.1; XM_008656445.1.
DR   AlphaFoldDB; B6SGH0; -.
DR   SMR; B6SGH0; -.
DR   STRING; 4577.B6SGH0; -.
DR   PaxDb; 4577-AC183950-2_FGP005; -.
DR   EnsemblPlants; Zm00001eb365120_T001; Zm00001eb365120_P001; Zm00001eb365120.
DR   EnsemblPlants; Zm00001eb365120_T002; Zm00001eb365120_P002; Zm00001eb365120.
DR   EnsemblPlants; Zm00001eb365120_T003; Zm00001eb365120_P003; Zm00001eb365120.
DR   EnsemblPlants; Zm00001eb365120_T004; Zm00001eb365120_P004; Zm00001eb365120.
DR   GeneID; 100274616; -.
DR   Gramene; Zm00001eb365120_T001; Zm00001eb365120_P001; Zm00001eb365120.
DR   Gramene; Zm00001eb365120_T002; Zm00001eb365120_P002; Zm00001eb365120.
DR   Gramene; Zm00001eb365120_T003; Zm00001eb365120_P003; Zm00001eb365120.
DR   Gramene; Zm00001eb365120_T004; Zm00001eb365120_P004; Zm00001eb365120.
DR   KEGG; zma:100274616; -.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_028941_1_0_1; -.
DR   InParanoid; B6SGH0; -.
DR   OMA; CRFSEAT; -.
DR   OrthoDB; 404661at2759; -.
DR   Proteomes; UP000007305; Chromosome 8.
DR   ExpressionAtlas; B6SGH0; baseline.
DR   GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 5.
DR   PANTHER; PTHR47941; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL; 1.
DR   PANTHER; PTHR47941:SF22; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL; 1.
DR   Pfam; PF13041; PPR_2; 2.
DR   Pfam; PF13812; PPR_3; 1.
DR   PROSITE; PS51375; PPR; 6.
PE   2: Evidence at transcript level;
KW   Reference proteome {ECO:0000313|Proteomes:UP000007305};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Transit peptide {ECO:0000256|ARBA:ARBA00022946}.
FT   REPEAT          228..262
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          263..297
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          298..332
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          370..404
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          405..439
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          440..474
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   488 AA;  53364 MW;  56CDC225EDFBF491 CRC64;
     MAASRRLARK LPSLISRYER LISPETDAPE LTEAPTTSAS IPFDPSLPVL PLAVSHLSPP
     NPLPVLPSAH ASSPASLFRL LRRARHHPRL VALDLHILLA AADASSAFRP DHSLTSLVAA
     RLAASRRLPS LQRLLELVLT RPCPCADDSI FACPELLPTF RKAIVAFAAS GDIPSASHAL
     ASLRRVADSP LPAEFYNIIL QALSRLRRHD DAIRFYGEMT SVYRVAPDVH TFNILISSSC
     RVEGVDAAMR WFGEMQRRSC APTVVSFNTL MRGFIREGRY KEGTKVAREM LELGVGLSVA
     SMEILIGGLC RGSKALEAAE LFVEFLGDGV VPEGFDCFEV VEALCRGGKV DRAVEAVDMV
     LERNTKCCMS APAGATVLEC LMEAGKLDEV YRLMWRMIDQ GIVPDSISCN CIFEALCEAG
     RTADANQLRV FAKEKGFEAD GETYRMLVQG FGRQGKRKEG KAVLDEMLDL GFIPNIASYN
     RLLGGLHK
//
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