ID B7FU31_PHATC Unreviewed; 659 AA.
AC B7FU31;
DT 10-FEB-2009, integrated into UniProtKB/TrEMBL.
DT 10-FEB-2009, sequence version 1.
DT 27-MAR-2024, entry version 61.
DE RecName: Full=HMG box domain-containing protein {ECO:0000259|PROSITE:PS50118};
GN ORFNames=PHATRDRAFT_44432 {ECO:0000313|EMBL:EEC49910.1};
OS Phaeodactylum tricornutum (strain CCAP 1055/1).
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae;
OC Phaeodactylum.
OX NCBI_TaxID=556484 {ECO:0000313|EMBL:EEC49910.1, ECO:0000313|Proteomes:UP000000759};
RN [1] {ECO:0000313|EMBL:EEC49910.1, ECO:0000313|Proteomes:UP000000759}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCAP 1055/1 {ECO:0000313|EMBL:EEC49910.1,
RC ECO:0000313|Proteomes:UP000000759};
RX PubMed=18923393; DOI=10.1038/nature07410;
RA Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A.,
RA Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A.,
RA Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.,
RA Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P.,
RA Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C.,
RA Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D.,
RA Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G.,
RA La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J.,
RA Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A.,
RA Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L.,
RA Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A.,
RA Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R.,
RA Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S.,
RA Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y.,
RA Grigoriev I.V.;
RT "The Phaeodactylum genome reveals the evolutionary history of diatom
RT genomes.";
RL Nature 456:239-244(2008).
RN [2] {ECO:0000313|Proteomes:UP000000759}
RP GENOME REANNOTATION.
RC STRAIN=CCAP 1055/1 {ECO:0000313|Proteomes:UP000000759};
RG Diatom Consortium;
RA Grigoriev I., Grimwood J., Kuo A., Otillar R.P., Salamov A., Detter J.C.,
RA Lindquist E., Shapiro H., Lucas S., Glavina del Rio T., Pitluck S.,
RA Rokhsar D., Bowler C.;
RL Submitted (AUG-2008) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CM000607; EEC49910.1; -; Genomic_DNA.
DR RefSeq; XP_002178245.1; XM_002178209.1.
DR AlphaFoldDB; B7FU31; -.
DR STRING; 556484.B7FU31; -.
DR PaxDb; 2850-Phatr44432; -.
DR GeneID; 7197673; -.
DR KEGG; pti:PHATRDRAFT_44432; -.
DR eggNOG; ENOG502T2D4; Eukaryota.
DR HOGENOM; CLU_851165_0_0_1; -.
DR InParanoid; B7FU31; -.
DR OrthoDB; 44482at2759; -.
DR Proteomes; UP000000759; Chromosome 4.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-UniRule.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd00084; HMG-box_SF; 1.
DR Gene3D; 1.10.30.10; High mobility group box domain; 2.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR PANTHER; PTHR48112; HIGH MOBILITY GROUP PROTEIN DSP1; 1.
DR PANTHER; PTHR48112:SF32; HIGH MOBILITY GROUP PROTEIN DSP1; 1.
DR Pfam; PF00505; HMG_box; 1.
DR SMART; SM00398; HMG; 2.
DR SUPFAM; SSF47095; HMG-box; 2.
DR PROSITE; PS50118; HMG_BOX_2; 2.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Reference proteome {ECO:0000313|Proteomes:UP000000759}.
FT DOMAIN 30..110
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DOMAIN 374..455
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DNA_BIND 30..110
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT DNA_BIND 374..455
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT REGION 464..484
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 637..659
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 465..484
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 659 AA; 75894 MW; E6B2923A515C2752 CRC64;
MQSHVNAFSF SASGLNTYGF LNQETDDPKP KRALSAYNIF FKHEREEILK ATPTRAEGKP
RRSHGKIGFA DLARTIAGRW KTVDVESKAK FIRLASQDKE RHAKEMKEWK EKRQKILIPP
ATSLASNATD CFFPRNSFSK MDLHRQEQIS IRNLLCNIPR KGENMTTTAM SSHQLQRAIP
QSLQSGAFRT GRSRNVQILY SEEADDIEPL PIDSHVFKSE FESHEQSYST QDSNSYWSLE
QDDQQYSSYE DEDLWIRTNP THSIQSATAY MPHQISRWNE QFPLEQNGLR HENTYWIGAY
ILESARFRLS SMKYCPVTYF RFISVKHYRK STMSSPPNSK HLQTAHYQGI VRENETMSDV
AQCRNEAHKE LSRLIRPSSA YNIFFRQERL HILQQAHLSS DEKTPKISQE KIGFAELSRT
IAARWKQATP EVRQKFDELA DAEKERNHVV VLEWEQLKMN KKNPQEVFTS EKPRPKPDQL
TNAEDSKFLE DIRKAIAQNT KLLVAMRSAV CCNTRILKFA EWRGFRTKGQ RFLSTNEIHC
KGGKLQASRE LLGPPRASSR YGVSPNVFDD AYSFPQRNLS SAPLNHQPVT FSSLPSECLG
PNTMTSYNEP YPGSHAACFE PVYRDYVNNT CFPQRPLCLP SRSQQNTPTT NHTKRGSDA
//
