GenomeNet

Database: UniProt
Entry: B8BJI4_ORYSI
LinkDB: B8BJI4_ORYSI
Original site: B8BJI4_ORYSI 
ID   B8BJI4_ORYSI            Unreviewed;      1087 AA.
AC   B8BJI4;
DT   03-MAR-2009, integrated into UniProtKB/TrEMBL.
DT   03-MAR-2009, sequence version 1.
DT   05-JUN-2019, entry version 65.
DE   RecName: Full=DNA polymerase {ECO:0000256|RuleBase:RU000442};
DE            EC=2.7.7.7 {ECO:0000256|RuleBase:RU000442};
GN   ORFNames=OsI_35398 {ECO:0000313|EMBL:EEC67820.1};
OS   Oryza sativa subsp. indica (Rice).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX   NCBI_TaxID=39946 {ECO:0000313|EMBL:EEC67820.1, ECO:0000313|Proteomes:UP000007015};
RN   [1] {ECO:0000313|EMBL:EEC67820.1, ECO:0000313|Proteomes:UP000007015}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. 93-11 {ECO:0000313|Proteomes:UP000007015};
RX   PubMed=15685292; DOI=10.1371/journal.pbio.0030038;
RA   Yu J., Wang J., Lin W., Li S., Li H., Zhou J., Ni P., Dong W., Hu S.,
RA   Zeng C., Zhang J., Zhang Y., Li R., Xu Z., Li S., Li X., Zheng H.,
RA   Cong L., Lin L., Yin J., Geng J., Li G., Shi J., Liu J., Lv H., Li J.,
RA   Wang J., Deng Y., Ran L., Shi X., Wang X., Wu Q., Li C., Ren X.,
RA   Wang J., Wang X., Li D., Liu D., Zhang X., Ji Z., Zhao W., Sun Y.,
RA   Zhang Z., Bao J., Han Y., Dong L., Ji J., Chen P., Wu S., Liu J.,
RA   Xiao Y., Bu D., Tan J., Yang L., Ye C., Zhang J., Xu J., Zhou Y.,
RA   Yu Y., Zhang B., Zhuang S., Wei H., Liu B., Lei M., Yu H., Li Y.,
RA   Xu H., Wei S., He X., Fang L., Zhang Z., Zhang Y., Huang X., Su Z.,
RA   Tong W., Li J., Tong Z., Li S., Ye J., Wang L., Fang L., Lei T.,
RA   Chen C., Chen H., Xu Z., Li H., Huang H., Zhang F., Xu H., Li N.,
RA   Zhao C., Li S., Dong L., Huang Y., Li L., Xi Y., Qi Q., Li W.,
RA   Zhang B., Hu W., Zhang Y., Tian X., Jiao Y., Liang X., Jin J., Gao L.,
RA   Zheng W., Hao B., Liu S., Wang W., Yuan L., Cao M., McDermott J.,
RA   Samudrala R., Wang J., Wong G.K., Yang H.;
RT   "The genomes of Oryza sativa: a history of duplications.";
RL   PLoS Biol. 3:266-281(2005).
CC   -!- CATALYTIC ACTIVITY:
CC       Reaction=a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) =
CC         diphosphate + DNA(n+1); Xref=Rhea:RHEA:22508, Rhea:RHEA-
CC         COMP:11130, Rhea:RHEA-COMP:11131, ChEBI:CHEBI:33019,
CC         ChEBI:CHEBI:61560, ChEBI:CHEBI:83828; EC=2.7.7.7;
CC         Evidence={ECO:0000256|RuleBase:RU000442};
CC   -!- COFACTOR:
CC       Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883;
CC         Evidence={ECO:0000256|RuleBase:RU000442};
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|RuleBase:RU000442}.
CC   -!- SIMILARITY: Belongs to the DNA polymerase type-B family.
CC       {ECO:0000256|RuleBase:RU000442}.
CC   -----------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   -----------------------------------------------------------------------
DR   EMBL; CM000136; EEC67820.1; -; Genomic_DNA.
DR   EnsemblPlants; BGIOSGA034372-TA; BGIOSGA034372-PA; BGIOSGA034372.
DR   Gramene; BGIOSGA034372-TA; BGIOSGA034372-PA; BGIOSGA034372.
DR   eggNOG; KOG0969; Eukaryota.
DR   eggNOG; COG0417; LUCA.
DR   HOGENOM; HOG000036616; -.
DR   OMA; CLVNYTE; -.
DR   Proteomes; UP000007015; Chromosome 11.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0051539; F:4 iron, 4 sulfur cluster binding; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0003887; F:DNA-directed DNA polymerase activity; IEA:UniProtKB-KW.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR   GO; GO:0006260; P:DNA replication; IEA:UniProtKB-KW.
DR   Gene3D; 1.10.132.60; -; 1.
DR   Gene3D; 3.30.420.10; -; 1.
DR   Gene3D; 3.90.1600.10; -; 1.
DR   InterPro; IPR006172; DNA-dir_DNA_pol_B.
DR   InterPro; IPR017964; DNA-dir_DNA_pol_B_CS.
DR   InterPro; IPR006133; DNA-dir_DNA_pol_B_exonuc.
DR   InterPro; IPR006134; DNA-dir_DNA_pol_B_multi_dom.
DR   InterPro; IPR042087; DNA_pol_B_C.
DR   InterPro; IPR023211; DNA_pol_palm_dom_sf.
DR   InterPro; IPR012337; RNaseH-like_sf.
DR   InterPro; IPR036397; RNaseH_sf.
DR   InterPro; IPR025687; Znf-C4pol.
DR   Pfam; PF00136; DNA_pol_B; 1.
DR   Pfam; PF03104; DNA_pol_B_exo1; 1.
DR   Pfam; PF14260; zf-C4pol; 1.
DR   PRINTS; PR00106; DNAPOLB.
DR   SMART; SM00486; POLBc; 1.
DR   SUPFAM; SSF53098; SSF53098; 1.
DR   PROSITE; PS00116; DNA_POLYMERASE_B; 1.
PE   3: Inferred from homology;
KW   4Fe-4S {ECO:0000256|RuleBase:RU000442};
KW   Complete proteome {ECO:0000313|Proteomes:UP000007015};
KW   DNA replication {ECO:0000256|RuleBase:RU000442};
KW   DNA-binding {ECO:0000256|RuleBase:RU000442};
KW   DNA-directed DNA polymerase {ECO:0000256|RuleBase:RU000442};
KW   Iron {ECO:0000256|RuleBase:RU000442};
KW   Iron-sulfur {ECO:0000256|RuleBase:RU000442};
KW   Metal-binding {ECO:0000256|RuleBase:RU000442};
KW   Nucleotidyltransferase {ECO:0000256|RuleBase:RU000442};
KW   Nucleus {ECO:0000256|RuleBase:RU000442};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007015};
KW   Transferase {ECO:0000256|RuleBase:RU000442};
KW   Zinc {ECO:0000256|RuleBase:RU000442};
KW   Zinc-finger {ECO:0000256|RuleBase:RU000442}.
FT   DOMAIN      138    463       DNA_pol_B_exo1. {ECO:0000259|Pfam:
FT                                PF03104}.
FT   DOMAIN      527    960       DNA_pol_B. {ECO:0000259|Pfam:PF00136}.
FT   DOMAIN      997   1068       zf-C4pol. {ECO:0000259|Pfam:PF14260}.
FT   REGION        1     44       Disordered. {ECO:0000256|MobiDB-lite:
FT                                B8BJI4}.
SQ   SEQUENCE   1087 AA;  121563 MW;  32355B4BD4835CC0 CRC64;
     MSSGGRGGKR RGAPPPGPSG AAAKRAHPGG TPQPPPPAAT AAAPVVEEED MMDEDVFLDE
     TILAEDEEAL LLLDRDEALA SRLSRWKRPA LPADLASGCS RNVAFQQLEI DYVIGESHKV
     LLPNSSGPAA ILRIFGVTRE GHSVCCQVHG FEPYFYISCP MGMGPDDISR FHQTLEGRMK
     DSNRNSNVPR FVKRIELVQK QTIMHYQPQQ SQPFLKIVVA LPTMVASCRG ILERGITIEG
     LGSKSFLTYE SNILFALRFM IDCNIVGGNW IEVPAGKYSD LVSHAAEGEH SKMAPFRILS
     FDIECAGRKG HFPEPTHDPV IQIANLVTLQ GEGQPFVRNV MTLKSCSPIV GVDVMSFDTE
     RDVLLAWRDF IREVDPDIII GYNICKFDLP YLIERAEVLK IVEFPILGRI RNSRVRVRDT
     TFSSRQYGMR ESKDVAVEGR VQFDLLQAMQ RDYKLSSYSL NSVSAHFLGE QKEDVHHSII
     SDLQNGNSET RRRLAVYCLK DAYLPQRLLD KLMYIYNYVE MARVTGVPIS FLLSRGQSIK
     VLSQLLRKAK QKNLVIPNIK GQASGQDTFE GATVLEARAG FYEKPIATLD FASLYPSIMM
     AYNLCYCTLV PPEDARKLNL PPESVNKTPS GETFVKPDVQ KGILPEILEE LLAARKRAKA
     DLKEAKDPFE RAVLDGRQLA LKISANSVYG FTGATVGQLP CLEISSSVTS YGRQMIEHTK
     KLVEDKFTTL GGYEHNAEVI YGDTDSVMVQ FGVSTVEDAM KLGREAADYI SGTFIKPIKL
     EFEKIYFPYL LISKKRYAGL YWTNPEKFDK MDTKGIETVR RDNCLLVKNL VTECLHKILV
     DRDVPGAVQY VKNTISDLLM NRVDLSLLVI TKGLTKTGED YAVKAAHVEL AERMRKRDAA
     TAPTVGDRVP YVIIKAAKGA KAYERSEDPI YVLDNNIPID PQYYLENQIS KPLLRIFEPI
     LKNASRELLH GSHTRAVSIS TPSNSGIMKF AKKQLTCLGC KAVISGSNQT LCSHCKGREA
     ELYCKTVGNV SELEMLFGRL WTQCQECQGS LHQDVLCTSR DCPIFYRRRK AQKDMAEARV
     QLQRWDF
//
DBGET integrated database retrieval system