ID B8BS54_THAPS Unreviewed; 960 AA.
AC B8BS54;
DT 03-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 03-MAR-2009, sequence version 1.
DT 27-MAR-2024, entry version 61.
DE RecName: Full=Chromo domain-containing protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=THAPSDRAFT_1863 {ECO:0000313|EMBL:EED96661.1};
OS Thalassiosira pseudonana (Marine diatom) (Cyclotella nana).
OC Eukaryota; Sar; Stramenopiles; Ochrophyta; Bacillariophyta;
OC Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales;
OC Thalassiosiraceae; Thalassiosira.
OX NCBI_TaxID=35128 {ECO:0000313|EMBL:EED96661.1, ECO:0000313|Proteomes:UP000001449};
RN [1] {ECO:0000313|EMBL:EED96661.1, ECO:0000313|Proteomes:UP000001449}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:EED96661.1};
RX PubMed=15459382; DOI=10.1126/science.1101156;
RA Armbrust E.V., Berges J.A., Bowler C., Green B.R., Martinez D.,
RA Putnam N.H., Zhou S., Allen A.E., Apt K.E., Bechner M., Brzezinski M.A.,
RA Chaal B.K., Chiovitti A., Davis A.K., Demarest M.S., Detter J.C.,
RA Glavina T., Goodstein D., Hadi M.Z., Hellsten U., Hildebrand M.,
RA Jenkins B.D., Jurka J., Kapitonov V.V., Kroger N., Lau W.W., Lane T.W.,
RA Larimer F.W., Lippmeier J.C., Lucas S., Medina M., Montsant A., Obornik M.,
RA Parker M.S., Palenik B., Pazour G.J., Richardson P.M., Rynearson T.A.,
RA Saito M.A., Schwartz D.C., Thamatrakoln K., Valentin K., Vardi A.,
RA Wilkerson F.P., Rokhsar D.S.;
RT "The genome of the diatom Thalassiosira pseudonana: ecology, evolution, and
RT metabolism.";
RL Science 306:79-86(2004).
RN [2] {ECO:0000313|EMBL:EED96661.1, ECO:0000313|Proteomes:UP000001449}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=CCMP1335 {ECO:0000313|EMBL:EED96661.1};
RX PubMed=18923393; DOI=10.1038/nature07410;
RA Bowler C., Allen A.E., Badger J.H., Grimwood J., Jabbari K., Kuo A.,
RA Maheswari U., Martens C., Maumus F., Otillar R.P., Rayko E., Salamov A.,
RA Vandepoele K., Beszteri B., Gruber A., Heijde M., Katinka M., Mock T.,
RA Valentin K., Verret F., Berges J.A., Brownlee C., Cadoret J.P.,
RA Chiovitti A., Choi C.J., Coesel S., De Martino A., Detter J.C., Durkin C.,
RA Falciatore A., Fournet J., Haruta M., Huysman M.J., Jenkins B.D.,
RA Jiroutova K., Jorgensen R.E., Joubert Y., Kaplan A., Kroger N., Kroth P.G.,
RA La Roche J., Lindquist E., Lommer M., Martin-Jezequel V., Lopez P.J.,
RA Lucas S., Mangogna M., McGinnis K., Medlin L.K., Montsant A.,
RA Oudot-Le Secq M.P., Napoli C., Obornik M., Parker M.S., Petit J.L.,
RA Porcel B.M., Poulsen N., Robison M., Rychlewski L., Rynearson T.A.,
RA Schmutz J., Shapiro H., Siaut M., Stanley M., Sussman M.R., Taylor A.R.,
RA Vardi A., von Dassow P., Vyverman W., Willis A., Wyrwicz L.S.,
RA Rokhsar D.S., Weissenbach J., Armbrust E.V., Green B.R., Van de Peer Y.,
RA Grigoriev I.V.;
RT "The Phaeodactylum genome reveals the evolutionary history of diatom
RT genomes.";
RL Nature 456:239-244(2008).
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; CM000638; EED96661.1; -; Genomic_DNA.
DR RefSeq; XP_002287020.1; XM_002286984.1.
DR AlphaFoldDB; B8BS54; -.
DR STRING; 35128.B8BS54; -.
DR PaxDb; 35128-Thaps1863; -.
DR EnsemblProtists; EED96661; EED96661; THAPSDRAFT_1863.
DR GeneID; 7445664; -.
DR KEGG; tps:THAPSDRAFT_1863; -.
DR eggNOG; ENOG502QRHI; Eukaryota.
DR HOGENOM; CLU_307881_0_0_1; -.
DR InParanoid; B8BS54; -.
DR OMA; YIFMGRE; -.
DR Proteomes; UP000001449; Chromosome 1.
DR GO; GO:0005721; C:pericentric heterochromatin; IBA:GO_Central.
DR GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR GO; GO:0035064; F:methylated histone binding; IBA:GO_Central.
DR GO; GO:0006325; P:chromatin organization; IBA:GO_Central.
DR GO; GO:0000122; P:negative regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00024; CD_CSD; 1.
DR Gene3D; 2.40.50.40; -; 1.
DR Gene3D; 2.60.120.650; Cupin; 2.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR InterPro; IPR023780; Chromo_domain.
DR InterPro; IPR003347; JmjC_dom.
DR PANTHER; PTHR22812; CHROMOBOX PROTEIN; 1.
DR PANTHER; PTHR22812:SF112; FI06908P; 1.
DR Pfam; PF00385; Chromo; 1.
DR SMART; SM00298; CHROMO; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS50013; CHROMO_2; 1.
DR PROSITE; PS51184; JMJC; 1.
PE 4: Predicted;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000001449}.
FT DOMAIN 133..193
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT DOMAIN 455..662
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 1..109
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 326..373
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 936..960
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 9..44
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 45..71
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 83..104
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 326..350
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 351..365
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 960 AA; 107082 MW; E19D0ADBB518FE5D CRC64;
MSSKRTSSRV TDVESKDDVD ASQRTKRMEL YARAAQRKSE RATKQRPSAS SMSSNDEGKQ
KARGSSSKQS IKQVRNKRHH QQTKEAKRAE EEEARKRARK SKLPSEVAQH PGNVIAEAEV
AVGKATRIED FFWEVEAVIG KKYTKQGVRY LIRWKGCGEE GDTWEPISNL CDTAYAAAKE
FDKKKELQEK KWEKGEKALF GDGDEKIVST GEEETSDNAA VVALGNTADA VDAVFGESAD
HQNNIDVDDE KKDRKMASVA EDEEDDLWDW TNKDKVVFHE VERIDVNSPD AGKLVTNART
NGTPVVLVGH LGWAQFATRW LTKVESEEKN NAAADEVKKD NPKTIDEEEV VDTSTTLTAT
STELESNTTD HDEKKLASVD PDINAYETGN DAIAINAVGA AVAAGTNANV GTATAATQKN
TITTDDVGAV VADTAANVNV EVGLCNDSKG ASKRQSESQL LDLSRQNYKL DVEKMLQDIG
EEDVPVIRRY YNEVKPIHGH ISASKFLTTC WPNSQVAPAK KQGNFYLHQW QFPLSDTAGR
KLCHQNNPLP KGIMGDDLLK YWLDLPQCKH DSPLQYIFMG REDTLSKLHK DPASLDDPDT
HRFPLISQAR IWRTTIKPGE ILLIPNGTYH QCRNVTPCLS YSRFHLDTLN LLPFVLSLAT
GDAPEIDHEE VLWNLTTSLI TLLDDVEKET RGRMKRGLST DDLLTNEVVE AVNTLMTLRH
IVREVARRHE VRTMVKALFT SKDFNQLVED IDVCLHDFRY RKAKVVPMLK VKKAKSLTNT
LARGGGKGAI KRDLSKFEVD GRPIVAFNSG LEVNYMSLND SVIRKHYPLI HELEANDKIV
VRLQQKCCKA DVIEIVSNTR FVYLSFEEYP LIYDEYQPSN LVRFPNGDEI PPDGIKPGLV
VIDISNSNEY KAVIKSVEDG PMAKVTLHSC LQIDAESTRR QPTKQSLSSA AKSAGSSAED
//
