ID B8DIJ3_DESVM Unreviewed; 1000 AA.
AC B8DIJ3;
DT 03-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 03-MAR-2009, sequence version 1.
DT 27-MAR-2024, entry version 79.
DE SubName: Full=Diguanylate cyclase with PAS/PAC and GAF sensors {ECO:0000313|EMBL:ACL09291.1};
GN OrderedLocusNames=DvMF_2350 {ECO:0000313|EMBL:ACL09291.1};
OS Desulfovibrio vulgaris (strain DSM 19637 / Miyazaki F).
OC Bacteria; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales;
OC Desulfovibrionaceae; Nitratidesulfovibrio.
OX NCBI_TaxID=883 {ECO:0000313|EMBL:ACL09291.1};
RN [1] {ECO:0000313|EMBL:ACL09291.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Miyazaki F {ECO:0000313|EMBL:ACL09291.1};
RG US DOE Joint Genome Institute;
RA Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H.,
RA Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C.,
RA Larimer F., Land M., Hauser L., Kyrpides N., Mikhailova N., Hazen T.C.,
RA Richardson P.;
RT "Complete sequence of Desulfovibrio vulgaris str. 'Miyazaki F'.";
RL Submitted (OCT-2008) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP001197; ACL09291.1; -; Genomic_DNA.
DR AlphaFoldDB; B8DIJ3; -.
DR STRING; 883.DvMF_2350; -.
DR KEGG; dvm:DvMF_2350; -.
DR eggNOG; COG2205; Bacteria.
DR eggNOG; COG3706; Bacteria.
DR eggNOG; COG5000; Bacteria.
DR HOGENOM; CLU_299719_0_0_7; -.
DR OrthoDB; 5460745at2; -.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd01949; GGDEF; 1.
DR CDD; cd00130; PAS; 4.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.70.270; -; 1.
DR Gene3D; 3.30.450.20; PAS domain; 5.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR000160; GGDEF_dom.
DR InterPro; IPR029787; Nucleotide_cyclase.
DR InterPro; IPR001610; PAC.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR000700; PAS-assoc_C.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR013655; PAS_fold_3.
DR InterPro; IPR043128; Rev_trsase/Diguanyl_cyclase.
DR NCBIfam; TIGR00254; GGDEF; 1.
DR NCBIfam; TIGR00229; sensory_box; 3.
DR PANTHER; PTHR44757:SF11; DIGUANYLATE CYCLASE DGCE-RELATED; 1.
DR PANTHER; PTHR44757; DIGUANYLATE CYCLASE DGCP; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF00990; GGDEF; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF08447; PAS_3; 1.
DR Pfam; PF13426; PAS_9; 1.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00267; GGDEF; 1.
DR SMART; SM00086; PAC; 4.
DR SMART; SM00091; PAS; 5.
DR SUPFAM; SSF55781; GAF domain-like; 1.
DR SUPFAM; SSF55073; Nucleotide cyclase; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 5.
DR PROSITE; PS50887; GGDEF; 1.
DR PROSITE; PS50113; PAC; 4.
DR PROSITE; PS50112; PAS; 3.
PE 4: Predicted;
FT DOMAIN 305..362
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 389..442
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 443..513
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 517..569
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 644..690
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 691..761
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 763..813
FT /note="PAC"
FT /evidence="ECO:0000259|PROSITE:PS50113"
FT DOMAIN 845..978
FT /note="GGDEF"
FT /evidence="ECO:0000259|PROSITE:PS50887"
SQ SEQUENCE 1000 AA; 111464 MW; 46C390901D313B74 CRC64;
MDFIRIGERT RNRWQLSLDT LARLLGIGVA AIMRRHPGGL SVLLSSNTAG NPLVPGMRIA
TMAGGTYCDA VIEAGRPVHV QNALDDPLWR DSPMVRAGFV AYLGYPLLLP DGQLFGTLCL
LETRQWLISG MHRGIVDDFH GQVEETLALA YENALFGAQQ DTLPSAALTV DIRGMVARVN
RRFPKVWGID VDASSLVGRP LAEVRTLLAD RLRDSAAIAG VLPADEVGLA AEPFTLAAQA
VPSASVPSAR MPDGTGGYPV LLADGRVLRR TYRTLRGEYG RTWGSVWLFE DVTAEVRAQE
ALTRSEERLK LALDAASEAH WDWNFETGEL YCSPRYYEML GYVPGEFECT HDALRDLMHP
DDLCEVTTAL CMPDPAVSHA VEACGVGQFE VQFRLRAKGG DWKWMLARGR VLARREDGSP
ARVVGTHMDI TAAVSQRLAL GRSEELFRGI FSTASVGIVL LDRFGLLVRV NDACARMLGY
ATDEMRGQHF SRFMHDDETT LAATTLTSLL DRTQSTSRLQ HRLRGKDGSY LWTDISASPL
EGPNGEVEAA LAIIVDINEQ RTAQQAQEDS ERRYRALFEN AQVGIFRTRI SDGRFMEANS
RIIEMYGWPD RAEFMEKMRS TEWYVDSEAR GRMVGTLLRR GEFRNIEVEM RRRDGSTVWF
EYSGKLDGDT IIGVAQDVTQ RRAAEAARQR SEAHYRLLFE AAADAIFLHD PEGKFLDVNE
VACRRLGYTR RELLAMTPRE LDAEEFAEQV GERIRRLREE GSLTFESAHR TRNGTVLPVE
IHAKLLDFDG KPVVLSIARD ITDRKRLEQA LMREATTDPL TGIRNRRQFF VDAEREMGRA
VRYGRPLAVL MLDLDRFKRV NDRFGHHAGD AVLMGCVQAC QQALRETDIL GRLGGEEFAA
VLLETDLDDA LAAAERLRRA VEEMDVPFSG QRLRCTVSIG LALRGPGDGA LDDILRRADS
ALYAAKEAGR NRVMLARAVN SGAEDQNRRW SSGGVLRGES
//
