ID B8I9K7_METNO Unreviewed; 670 AA.
AC B8I9K7;
DT 03-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 03-MAR-2009, sequence version 1.
DT 27-MAR-2024, entry version 76.
DE SubName: Full=ErfK/YbiS/YcfS/YnhG family protein {ECO:0000313|EMBL:ACL55260.1};
GN OrderedLocusNames=Mnod_0215 {ECO:0000313|EMBL:ACL55260.1};
OS Methylobacterium nodulans (strain LMG 21967 / CNCM I-2342 / ORS 2060).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales;
OC Methylobacteriaceae; Methylobacterium.
OX NCBI_TaxID=460265 {ECO:0000313|EMBL:ACL55260.1, ECO:0000313|Proteomes:UP000008207};
RN [1] {ECO:0000313|EMBL:ACL55260.1, ECO:0000313|Proteomes:UP000008207}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=LMG 21967 / CNCM I-2342 / ORS 2060
RC {ECO:0000313|Proteomes:UP000008207};
RG US DOE Joint Genome Institute;
RA Lucas S., Copeland A., Lapidus A., Glavina del Rio T., Dalin E., Tice H.,
RA Bruce D., Goodwin L., Pitluck S., Sims D., Brettin T., Detter J.C., Han C.,
RA Larimer F., Land M., Hauser L., Kyrpides N., Ivanova N., Marx C.J.,
RA Richardson P.;
RT "Complete sequence of chromosome of Methylobacterium nodulans ORS 2060.";
RL Submitted (JAN-2009) to the EMBL/GenBank/DDBJ databases.
CC -!- PATHWAY: Cell wall biogenesis; peptidoglycan biosynthesis.
CC {ECO:0000256|ARBA:ARBA00004752}.
CC -!- SIMILARITY: Belongs to the YkuD family.
CC {ECO:0000256|ARBA:ARBA00005992}.
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DR EMBL; CP001349; ACL55260.1; -; Genomic_DNA.
DR RefSeq; WP_015926973.1; NC_011894.1.
DR AlphaFoldDB; B8I9K7; -.
DR STRING; 460265.Mnod_0215; -.
DR KEGG; mno:Mnod_0215; -.
DR eggNOG; COG2989; Bacteria.
DR HOGENOM; CLU_020360_2_0_5; -.
DR OrthoDB; 9778545at2; -.
DR UniPathway; UPA00219; -.
DR Proteomes; UP000008207; Chromosome.
DR GO; GO:0004180; F:carboxypeptidase activity; IEA:UniProt.
DR GO; GO:0016740; F:transferase activity; IEA:UniProtKB-KW.
DR GO; GO:0009252; P:peptidoglycan biosynthetic process; IEA:UniProtKB-UniPathway.
DR CDD; cd16913; YkuD_like; 1.
DR Gene3D; 2.40.440.10; L,D-transpeptidase catalytic domain-like; 1.
DR Gene3D; 1.10.101.10; PGBD-like superfamily/PGBD; 1.
DR InterPro; IPR005490; LD_TPept_cat_dom.
DR InterPro; IPR045380; LD_TPept_scaffold_dom.
DR InterPro; IPR002477; Peptidoglycan-bd-like.
DR InterPro; IPR036365; PGBD-like_sf.
DR InterPro; IPR036366; PGBDSf.
DR InterPro; IPR038063; Transpep_catalytic_dom.
DR PANTHER; PTHR41533:SF2; BLR7131 PROTEIN; 1.
DR PANTHER; PTHR41533; L,D-TRANSPEPTIDASE HI_1667-RELATED; 1.
DR Pfam; PF01471; PG_binding_1; 1.
DR Pfam; PF20142; Scaffold; 1.
DR Pfam; PF03734; YkuD; 1.
DR SUPFAM; SSF141523; L,D-transpeptidase catalytic domain-like; 1.
DR SUPFAM; SSF47090; PGBD-like; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000008207};
KW Signal {ECO:0000256|SAM:SignalP};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT SIGNAL 1..24
FT /evidence="ECO:0000256|SAM:SignalP"
FT CHAIN 25..670
FT /evidence="ECO:0000256|SAM:SignalP"
FT /id="PRO_5002873867"
FT DOMAIN 113..248
FT /note="L,D-transpeptidase scaffold"
FT /evidence="ECO:0000259|Pfam:PF20142"
FT DOMAIN 285..328
FT /note="Peptidoglycan binding-like"
FT /evidence="ECO:0000259|Pfam:PF01471"
FT DOMAIN 357..504
FT /note="L,D-transpeptidase catalytic"
FT /evidence="ECO:0000259|Pfam:PF03734"
FT REGION 22..86
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 569..640
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 584..599
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 670 AA; 70981 MW; AA3ABD9F991C50E4 CRC64;
MLPRRRAAAL VAVLMAGAAS LAGARAQEAA PPASPPEAAA PTPPAAAEAP VQATEPPAET
AAPQAQPAEA PAQAAEASKP PLPDDPVAAA IATKLADSTV PLLRRFGRRE REALQAFYAL
GAFKPVWITD GAWTDAAKAV IARLGAAGED GLDPLDYPIP TLGIPTGSPA DLAEADLKLS
AAAALYARDA RGGRIEPSRL SRLITPKLDL PSADAVLPRL AAAGPGANAV LQSYNPSQTG
YLALKAKLAA LRSQRPGGVP MVRLPKGPTL KPGMRDARVP LIRARFGLGP ADDATAYDAA
VAGAVERFQR ERGLAATGIL NPETVAALAG PSPGRQEADL LANMERWRWL PADLGKTHVW
VNIPEYKVRV VSGTRVVDEA RVIVGKPDSP TPVFSGEMTY AVVNPSWNVP PSILKNEFLP
RLARDPTYAA RLGYEVVRRG NGIAIRQPPG ERNALGFIKF MFPNDHAVYL HDTPNRALFA
RSARALSHGC VRVDDPFRFA EVVLGPTWPT ERLKRLIGKG ERTVMLPEKL PVHLAYFTLV
ADEAGTLRQF DDLYGINARV KMALGLSNEP LPAPEVSRKP KVKPAPAHSP PPHAPAPVPH
APTREARAAR TAPAPAREAR PARVVAQAPR RTRPVATAGQ AVVQPAPDYY APAPAYAPAP
APASSRFGWW
//
