ID B9HB15_POPTR Unreviewed; 718 AA.
AC B9HB15;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 13-FEB-2019, sequence version 3.
DT 24-JAN-2024, entry version 74.
DE RecName: Full=USP domain-containing protein {ECO:0000259|PROSITE:PS50235};
GN ORFNames=POPTR_006G185200 {ECO:0000313|EMBL:PNT32358.2};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:PNT32358.2, ECO:0000313|Proteomes:UP000006729};
RN [1] {ECO:0000313|EMBL:PNT32358.2, ECO:0000313|Proteomes:UP000006729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
CC -!- SIMILARITY: Belongs to the peptidase C19 family.
CC {ECO:0000256|ARBA:ARBA00009085}.
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DR EMBL; CM009295; PNT32358.2; -; Genomic_DNA.
DR AlphaFoldDB; B9HB15; -.
DR Proteomes; UP000006729; Chromosome 6.
DR ExpressionAtlas; B9HB15; baseline and differential.
DR GO; GO:0004843; F:cysteine-type deubiquitinase activity; IEA:InterPro.
DR Gene3D; 3.90.70.10; Cysteine proteinases; 1.
DR InterPro; IPR038765; Papain-like_cys_pep_sf.
DR InterPro; IPR001394; Peptidase_C19_UCH.
DR InterPro; IPR018200; USP_CS.
DR InterPro; IPR028889; USP_dom.
DR InterPro; IPR013087; Znf_C2H2_type.
DR PANTHER; PTHR24006; UBIQUITIN CARBOXYL-TERMINAL HYDROLASE; 1.
DR PANTHER; PTHR24006:SF663; UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 23; 1.
DR Pfam; PF00443; UCH; 1.
DR SUPFAM; SSF54001; Cysteine proteinases; 1.
DR PROSITE; PS00973; USP_2; 1.
DR PROSITE; PS50235; USP_3; 1.
DR PROSITE; PS00028; ZINC_FINGER_C2H2_1; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000006729}.
FT DOMAIN 1..181
FT /note="USP"
FT /evidence="ECO:0000259|PROSITE:PS50235"
FT REGION 235..264
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 356..416
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 668..718
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 238..264
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 356..370
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 390..405
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 668..682
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 718 AA; 79247 MW; B6D8A9A8F6C5D705 CRC64;
MFLSVCFQVE CQQCSYCSNK FDPFLDLSLE IAKADTLPAL LRNFTAAEML DGGEKHYQCQ
RCKQKVRAKK WLTVHKAPHV LTIHLKRFHA HDPGRKVDRK VIFDRSLDMK PFVSGSYEGD
LKYSLYGVLV HYGHNTHSGH YVCFVRTSSG IWHLLNDNQV RQVSEKAVLE QKAYMLFYVR
DRKTIVPRKP VDVVHKESMK ATFGNNFADL VAKQFSNECV GGGLIGNRLE ATDSPAAMNK
KDASSVVTSS EIHPKDTSFQ QSSRQTLLKV DSSLETSSAP LSTDPSKLAN SHLGECLPPS
TASLNSNNVG PKLENASVIT EAKTSDCKEP FSSSSGPQSS AIDKLVTRET SQKINGDQNV
GVSSQAPYED SCGKTVGEVP RLAPSEGSTD KAFDKSNTVK SPNKPGCESD QGGDIPIESA
AWKTPSDKAG EGGQYIVHQL VEGLIPTAFV PSVIQNECLQ SKAPDCLPKK KLKNKRRMHL
GTNLFKVSLG LQKRKKHKKS NCHTSKTSNL IKENLQEQPE NDVFSSELGP STSKISSTVL
LASMNSRRKM AKSGSRKGDN VRNCRDMGVV DVESVERISP SSAVLAMDEQ RRKISISISE
VNQGDPREPD CSENSKRYAS QNRMMGVITG GVKETVSPWD GIAMPPQIVE SNGVENLSTG
YVADEWDEEY DRGKRKKPRQ SMHNFDGPNL LQAFATKKTQ VKKAKIDRSR SGNQPFRI
//