ID B9IH22_POPTR Unreviewed; 700 AA.
AC B9IH22;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 11-DEC-2013, sequence version 2.
DT 27-MAR-2024, entry version 79.
DE RecName: Full=Smr domain-containing protein {ECO:0000259|PROSITE:PS50828};
GN ORFNames=POPTR_016G006800 {ECO:0000313|EMBL:PNS97193.1};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:PNS97193.1, ECO:0000313|Proteomes:UP000006729};
RN [1] {ECO:0000313|EMBL:PNS97193.1, ECO:0000313|Proteomes:UP000006729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; CM009305; PNS97193.1; -; Genomic_DNA.
DR RefSeq; XP_002322504.2; XM_002322468.2.
DR AlphaFoldDB; B9IH22; -.
DR GeneID; 7474081; -.
DR KEGG; pop:7474081; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_018319_0_0_1; -.
DR InParanoid; B9IH22; -.
DR OMA; GVKPNMV; -.
DR OrthoDB; 904281at2759; -.
DR Proteomes; UP000006729; Chromosome 16.
DR GO; GO:0009570; C:chloroplast stroma; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0042134; F:rRNA primary transcript binding; IBA:GO_Central.
DR GO; GO:0045727; P:positive regulation of translation; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR002625; Smr_dom.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 7.
DR PANTHER; PTHR47447; OS03G0856100 PROTEIN; 1.
DR PANTHER; PTHR47447:SF12; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ATP4 HOMOLOG, CHLOROPLASTIC; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF13812; PPR_3; 1.
DR Pfam; PF17177; PPR_long; 1.
DR SMART; SM00463; SMR; 1.
DR SUPFAM; SSF81901; HCP-like; 1.
DR PROSITE; PS51375; PPR; 8.
DR PROSITE; PS50828; SMR; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000006729};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 175..209
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 210..244
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 245..279
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 280..314
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 315..349
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 350..384
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 385..419
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 420..454
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 602..686
FT /note="Smr"
FT /evidence="ECO:0000259|PROSITE:PS50828"
FT REGION 59..85
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 700 AA; 78712 MW; 098BCB997D668D9C CRC64;
MAYNLCSSPS SLYQPLCNTL SSSSRDSKPR TLNNNFYHSL KLNTPSPQSR TTSLQITNVS
LQDQKIPQQE TSKDSNFNEK NGSSSKSYIW VNPKSSKAST LRKSSYDARY ASLIKAAKSL
NSCNPNKDDV FNILGEFGNK LFEHDAVVIL NNMSNPDTAL LALKFFRERL EFNREVVVYN
VTMKVLRKCR DLNKVEKLFD EMIERAVKPD NVTFSTIISC ARLCNLADKA VEWFEKMPSF
GLDPDDVTFS TMIDSYGRVG NVEKALSLYD RARTEKWRLD TTTFSTLIRI YKDSGNFDGC
LNVYEEMKAL GVKPNLVIYN TLLDAMGRAR RPWQAKKFYQ DIIDSGLSPS YATYAALLRA
YGRARYGEDT IKIYKEMKEK ELSLNVLLYN TILAMCADLG FVDEAIEIFE DMKNSGISPD
SWTFSSMITM SSCCGKVSEA ENMLNEMFEA GFQPNIFVLT SLIQCYGKAQ RIDDVVKTFN
RLYELLITPD DRFCGCLLNV MTQTPNEELG KLVDCVERAN PKLGHVVKLL VEEQGNEGNF
KKEAADLFDN ISTEVKKAYC NCLIDLCVKL NMLERACELL DHGLTLGIYT DIQSKTSTQW
SLNLKSLSSG AALTALHVWI NDLSKALEAG EQLPPLLGIN TGHGKHKYSE KGLANVFESH
LKELNAPFHE APDKVGWFLT TKVAAESWLE SRKLADAVAA
//
