ID B9IPA1_POPTR Unreviewed; 359 AA.
AC B9IPA1;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 11-DEC-2013, sequence version 2.
DT 24-JAN-2024, entry version 81.
DE RecName: Full=Aromatic amino acid beta-eliminating lyase/threonine aldolase domain-containing protein {ECO:0000259|Pfam:PF01212};
GN ORFNames=POPTR_019G018500 {ECO:0000313|EMBL:PNS89956.1};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:PNS89956.1, ECO:0000313|Proteomes:UP000006729};
RN [1] {ECO:0000313|EMBL:PNS89956.1, ECO:0000313|Proteomes:UP000006729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729}, and
RC Nisqually-1 {ECO:0000313|EMBL:PNS89956.1};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
RN [2] {ECO:0000313|EMBL:PNS89956.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=Nisqually-1 {ECO:0000313|EMBL:PNS89956.1};
RA Tuskan G., Difazio S., Jansson S., Bohlmann J., Grigoriev I., Hellsten U.,
RA Putnam N., Ralph S., Rombauts S., Salamov A., Schein J., Sterck L.,
RA Aerts A., Bhalerao R., Bhalerao R., Blaudez D., Boerjan W., Brun A.,
RA Brunner A., Busov V., Campbell M., Carlson J., Chalot M., Chapman J.,
RA Chen G., Cooper D., Coutinho P., Couturier J., Covert S., Cronk Q.,
RA Cunningham R., Davis J., Degroeve S., Dejardin A., Depamphilis C.,
RA Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J., Ellis B.,
RA Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A., Gunter L.,
RA Hamberger B., Heinze B., Helariutta Y., Henrissat B., Holligan D., Holt R.,
RA Huang W., Islam-Faridi N., Jones S., Jones-Rhoades M., Jorgensen R.,
RA Joshi C., Kangasjarvi J., Karlsson J., Kelleher C., Kirkpatrick R.,
RA Kirst M., Kohler A., Kalluri U., Larimer F., Leebens-Mack J., Leple J.,
RA Locascio P., Lou Y., Lucas S., Martin F., Montanini B., Napoli C.,
RA Nelson D., Nelson C., Nieminen K., Nilsson O., Pereda V., Peter G.,
RA Philippe R., Pilate G., Poliakov A., Razumovskaya J., Richardson P.,
RA Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J., Schrader J.,
RA Segerman B., Shin H., Siddiqui A., Sterky F., Terry A., Tsai C.,
RA Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S., Yang G.,
RA Yin T., Douglas C., Marra M., Sandberg G., Van De Peer Y., Rokhsar D.;
RT "WGS assembly of Populus trichocarpa.";
RL Submitted (JUL-2017) to the EMBL/GenBank/DDBJ databases.
CC -!- COFACTOR:
CC Name=pyridoxal 5'-phosphate; Xref=ChEBI:CHEBI:597326;
CC Evidence={ECO:0000256|ARBA:ARBA00001933};
CC -!- SIMILARITY: Belongs to the threonine aldolase family.
CC {ECO:0000256|ARBA:ARBA00006966}.
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DR EMBL; CM009308; PNS89955.1; -; Genomic_DNA.
DR EMBL; CM009308; PNS89956.1; -; Genomic_DNA.
DR EMBL; CM009308; PNS89957.1; -; Genomic_DNA.
DR EMBL; CM009308; PNS89958.1; -; Genomic_DNA.
DR EMBL; CM009308; PNS89959.1; -; Genomic_DNA.
DR RefSeq; XP_002325334.2; XM_002325298.2.
DR AlphaFoldDB; B9IPA1; -.
DR STRING; 3694.B9IPA1; -.
DR EnsemblPlants; Potri.019G018500.4.v4.1; Potri.019G018500.4.v4.1; Potri.019G018500.v4.1.
DR EnsemblPlants; Potri.019G018500.6.v4.1; Potri.019G018500.6.v4.1; Potri.019G018500.v4.1.
DR EnsemblPlants; Potri.019G018500.7.v4.1; Potri.019G018500.7.v4.1; Potri.019G018500.v4.1.
DR EnsemblPlants; Potri.019G018500.8.v4.1; Potri.019G018500.8.v4.1; Potri.019G018500.v4.1.
DR EnsemblPlants; Potri.019G018500.9.v4.1; Potri.019G018500.9.v4.1; Potri.019G018500.v4.1.
DR GeneID; 7487180; -.
DR Gramene; Potri.019G018500.4.v4.1; Potri.019G018500.4.v4.1; Potri.019G018500.v4.1.
DR Gramene; Potri.019G018500.6.v4.1; Potri.019G018500.6.v4.1; Potri.019G018500.v4.1.
DR Gramene; Potri.019G018500.7.v4.1; Potri.019G018500.7.v4.1; Potri.019G018500.v4.1.
DR Gramene; Potri.019G018500.8.v4.1; Potri.019G018500.8.v4.1; Potri.019G018500.v4.1.
DR Gramene; Potri.019G018500.9.v4.1; Potri.019G018500.9.v4.1; Potri.019G018500.v4.1.
DR KEGG; pop:7487180; -.
DR eggNOG; KOG1368; Eukaryota.
DR HOGENOM; CLU_029381_0_4_1; -.
DR InParanoid; B9IPA1; -.
DR OMA; MIDFRSD; -.
DR OrthoDB; 178754at2759; -.
DR Proteomes; UP000006729; Chromosome 19.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0008732; F:L-allo-threonine aldolase activity; IBA:GO_Central.
DR GO; GO:0006545; P:glycine biosynthetic process; IBA:GO_Central.
DR GO; GO:0006567; P:threonine catabolic process; IBA:GO_Central.
DR Gene3D; 3.90.1150.10; Aspartate Aminotransferase, domain 1; 1.
DR Gene3D; 3.40.640.10; Type I PLP-dependent aspartate aminotransferase-like (Major domain); 1.
DR InterPro; IPR001597; ArAA_b-elim_lyase/Thr_aldolase.
DR InterPro; IPR023603; Low_specificity_L-TA-like.
DR InterPro; IPR015424; PyrdxlP-dep_Trfase.
DR InterPro; IPR015421; PyrdxlP-dep_Trfase_major.
DR InterPro; IPR015422; PyrdxlP-dep_Trfase_small.
DR NCBIfam; NF041359; GntG_guanitoxin; 1.
DR PANTHER; PTHR48097:SF9; L-THREONINE ALDOLASE; 1.
DR PANTHER; PTHR48097; L-THREONINE ALDOLASE-RELATED; 1.
DR Pfam; PF01212; Beta_elim_lyase; 1.
DR PIRSF; PIRSF017617; Thr_aldolase; 1.
DR SUPFAM; SSF53383; PLP-dependent transferases; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000006729}.
FT DOMAIN 7..294
FT /note="Aromatic amino acid beta-eliminating lyase/threonine
FT aldolase"
FT /evidence="ECO:0000259|Pfam:PF01212"
FT MOD_RES 207
FT /note="N6-(pyridoxal phosphate)lysine"
FT /evidence="ECO:0000256|PIRSR:PIRSR017617-1"
SQ SEQUENCE 359 AA; 38633 MW; 3DA2DB871A141D9D CRC64;
MVTRTVDLRS DTVTKPTEAM RAAMANAEVD DDVLSYDPSA LRLETEMAKV TGKEAALFVP
SGTMGNLVSV LVHCNIRGSE VILGNNSHIH IYENGGISTI GGVHPRTVKN NDDGTMDIDL
IEAAIRDPRG EIVYPTTRLI CLENTQANCG GRCLSVEYTD KVGELAKKHG LKLHMDGARI
FNASIALGVP VHRLLQAADS ASVCLSKGLG APVGSVIVGS KSFIAKARIL RKTLGGGMRQ
VGVLCAAALV ALHETVLKLE DDHKKTKMLA EGLNQIKGLR LNVAAVETNI IFFDVVEGAK
ITAEKLCKNL EQHGILVMQE SPVRIRVVLH HQISESDVQY ALSCFKQALT GRVQEENGN
//
