ID B9N3W8_POPTR Unreviewed; 314 AA.
AC B9N3W8;
DT 24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT 24-MAR-2009, sequence version 1.
DT 27-MAR-2024, entry version 92.
DE RecName: Full=HTH myb-type domain-containing protein {ECO:0000259|PROSITE:PS51294};
GN ORFNames=POPTR_016G001100 {ECO:0000313|EMBL:PNS97071.1};
OS Populus trichocarpa (Western balsam poplar) (Populus balsamifera subsp.
OS trichocarpa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus.
OX NCBI_TaxID=3694 {ECO:0000313|EMBL:PNS97071.1, ECO:0000313|Proteomes:UP000006729};
RN [1] {ECO:0000313|EMBL:PNS97071.1, ECO:0000313|Proteomes:UP000006729}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nisqually {ECO:0000313|Proteomes:UP000006729};
RX PubMed=16973872; DOI=10.1126/science.1128691;
RA Tuskan G.A., Difazio S., Jansson S., Bohlmann J., Grigoriev I.,
RA Hellsten U., Putnam N., Ralph S., Rombauts S., Salamov A., Schein J.,
RA Sterck L., Aerts A., Bhalerao R.R., Bhalerao R.P., Blaudez D., Boerjan W.,
RA Brun A., Brunner A., Busov V., Campbell M., Carlson J., Chalot M.,
RA Chapman J., Chen G.L., Cooper D., Coutinho P.M., Couturier J., Covert S.,
RA Cronk Q., Cunningham R., Davis J., Degroeve S., Dejardin A.,
RA Depamphilis C., Detter J., Dirks B., Dubchak I., Duplessis S., Ehlting J.,
RA Ellis B., Gendler K., Goodstein D., Gribskov M., Grimwood J., Groover A.,
RA Gunter L., Hamberger B., Heinze B., Helariutta Y., Henrissat B.,
RA Holligan D., Holt R., Huang W., Islam-Faridi N., Jones S.,
RA Jones-Rhoades M., Jorgensen R., Joshi C., Kangasjarvi J., Karlsson J.,
RA Kelleher C., Kirkpatrick R., Kirst M., Kohler A., Kalluri U., Larimer F.,
RA Leebens-Mack J., Leple J.C., Locascio P., Lou Y., Lucas S., Martin F.,
RA Montanini B., Napoli C., Nelson D.R., Nelson C., Nieminen K., Nilsson O.,
RA Pereda V., Peter G., Philippe R., Pilate G., Poliakov A., Razumovskaya J.,
RA Richardson P., Rinaldi C., Ritland K., Rouze P., Ryaboy D., Schmutz J.,
RA Schrader J., Segerman B., Shin H., Siddiqui A., Sterky F., Terry A.,
RA Tsai C.J., Uberbacher E., Unneberg P., Vahala J., Wall K., Wessler S.,
RA Yang G., Yin T., Douglas C., Marra M., Sandberg G., Van de Peer Y.,
RA Rokhsar D.;
RT "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).";
RL Science 313:1596-1604(2006).
CC -!- SIMILARITY: Belongs to the MYB-CC family.
CC {ECO:0000256|ARBA:ARBA00006783}.
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DR EMBL; CM009305; PNS97071.1; -; Genomic_DNA.
DR RefSeq; XP_006373551.1; XM_006373489.1.
DR AlphaFoldDB; B9N3W8; -.
DR STRING; 3694.B9N3W8; -.
DR EnsemblPlants; Potri.016G001100.1.v4.1; Potri.016G001100.1.v4.1; Potri.016G001100.v4.1.
DR GeneID; 18106009; -.
DR Gramene; Potri.016G001100.1.v4.1; Potri.016G001100.1.v4.1; Potri.016G001100.v4.1.
DR KEGG; pop:18106009; -.
DR eggNOG; ENOG502QU84; Eukaryota.
DR HOGENOM; CLU_053944_0_0_1; -.
DR InParanoid; B9N3W8; -.
DR OrthoDB; 5491517at2759; -.
DR Proteomes; UP000006729; Chromosome 16.
DR ExpressionAtlas; B9N3W8; baseline and differential.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003700; F:DNA-binding transcription factor activity; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR025756; Myb_CC_LHEQLE.
DR InterPro; IPR017930; Myb_dom.
DR InterPro; IPR006447; Myb_dom_plants.
DR InterPro; IPR046955; PHR1-like.
DR InterPro; IPR001005; SANT/Myb.
DR NCBIfam; TIGR01557; myb_SHAQKYF; 1.
DR PANTHER; PTHR31499:SF73; HTH MYB-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR31499; MYB FAMILY TRANSCRIPTION FACTOR PHL11; 1.
DR Pfam; PF14379; Myb_CC_LHEQLE; 1.
DR Pfam; PF00249; Myb_DNA-binding; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS51294; HTH_MYB; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000006729}.
FT DOMAIN 25..85
FT /note="HTH myb-type"
FT /evidence="ECO:0000259|PROSITE:PS51294"
FT REGION 88..112
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 170..250
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 291..314
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 88..104
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 178..200
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 216..243
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 314 AA; 34336 MW; 5D53ECA5F45D0558 CRC64;
MDLDCEAMTM DPINGGNSLN NNPNLASKQR LRWTHELHER FVDAVAQLGG PDRATPKGVL
RVMGVQGLTI YHVKSHLQKY RLAKYLPDSS SDGKKVDKKE TGDVLSNSDG SSGMQITEAL
KLQMEVQKRL HEQLEVQRQL QLRIEAQGKY LKKIIEEQQR LSGVLEDVPG SGVSAPVSGD
NCPVSDNKTD PATPAPTSES PLQDKVAKEC APTKSLSIDE SFSSQHEPLT PDSRCNTGSP
AESPRGERSL KKQMVSMGVA FGKPEMVLTH QILESSLNSY PQPHSAFLTR EQFDPSSGLS
MGNEDQSEVL GSDL
//
