ID   B9S7P5_RICCO            Unreviewed;       138 AA.
AC   B9S7P5;
DT   24-MAR-2009, integrated into UniProtKB/TrEMBL.
DT   24-MAR-2009, sequence version 1.
DT   24-JAN-2024, entry version 55.
DE   SubName: Full=DNA-directed RNA polymerase II, putative {ECO:0000313|EMBL:EEF40418.1};
GN   ORFNames=RCOM_0610380 {ECO:0000313|EMBL:EEF40418.1};
OS   Ricinus communis (Castor bean).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; fabids; Malpighiales; Euphorbiaceae; Acalyphoideae; Acalypheae;
OC   Ricinus.
OX   NCBI_TaxID=3988 {ECO:0000313|Proteomes:UP000008311};
RN   [1] {ECO:0000313|Proteomes:UP000008311}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Hale {ECO:0000313|Proteomes:UP000008311};
RX   PubMed=20729833; DOI=10.1038/nbt.1674;
RA   Chan A.P., Crabtree J., Zhao Q., Lorenzi H., Orvis J., Puiu D.,
RA   Melake-Berhan A., Jones K.M., Redman J., Chen G., Cahoon E.B., Gedil M.,
RA   Stanke M., Haas B.J., Wortman J.R., Fraser-Liggett C.M., Ravel J.,
RA   Rabinowicz P.D.;
RT   "Draft genome sequence of the oilseed species Ricinus communis.";
RL   Nat. Biotechnol. 28:951-956(2010).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- SIMILARITY: Belongs to the eukaryotic RPB4 RNA polymerase subunit
CC       family. {ECO:0000256|ARBA:ARBA00025724}.
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DR   EMBL; EQ973886; EEF40418.1; -; Genomic_DNA.
DR   RefSeq; XP_002522014.1; XM_002521968.2.
DR   AlphaFoldDB; B9S7P5; -.
DR   STRING; 3988.B9S7P5; -.
DR   GeneID; 8258662; -.
DR   KEGG; rcu:8258662; -.
DR   eggNOG; KOG2351; Eukaryota.
DR   InParanoid; B9S7P5; -.
DR   OrthoDB; 5477031at2759; -.
DR   Proteomes; UP000008311; Unassembled WGS sequence.
DR   GO; GO:0005665; C:RNA polymerase II, core complex; IBA:GO_Central.
DR   GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR   GO; GO:0031369; F:translation initiation factor binding; IBA:GO_Central.
DR   GO; GO:0034402; P:recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex; IBA:GO_Central.
DR   GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IBA:GO_Central.
DR   Gene3D; 1.20.1250.40; -; 1.
DR   InterPro; IPR010997; HRDC-like_sf.
DR   InterPro; IPR006590; RNA_pol_Rpb4/RPC9_core.
DR   InterPro; IPR045222; Rpb4-like.
DR   InterPro; IPR005574; Rpb4/RPC9.
DR   InterPro; IPR038324; Rpb4/RPC9_sf.
DR   PANTHER; PTHR21297; DNA-DIRECTED RNA POLYMERASE II; 1.
DR   PANTHER; PTHR21297:SF0; DNA-DIRECTED RNA POLYMERASE II SUBUNIT RPB4; 1.
DR   Pfam; PF03874; RNA_pol_Rpb4; 1.
DR   SMART; SM00657; RPOL4c; 1.
DR   SUPFAM; SSF47819; HRDC-like; 1.
PE   3: Inferred from homology;
KW   DNA-directed RNA polymerase {ECO:0000313|EMBL:EEF40418.1};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000008311};
KW   Transcription {ECO:0000313|EMBL:EEF40418.1}.
FT   DOMAIN          16..138
FT                   /note="RNA polymerase Rpb4/RPC9 core"
FT                   /evidence="ECO:0000259|SMART:SM00657"
SQ   SEQUENCE   138 AA;  15952 MW;  B9ECC614D247AC70 CRC64;
     MSGEEEENAS ELKIGDEFLK AKCLMNCEVA LILEHKYEQL QQMSNDPMNQ VSQVFEKSLQ
     YVKRFSRYKN PDAVRQVREI LSRYQLAEFE LCVLGNLCPE TVEEAIAMVP SIKTKGRAHD
     DEAIEKMLTD LSMIKKFE
//