ID B9XC37_PEDPL Unreviewed; 504 AA.
AC B9XC37;
DT 14-APR-2009, integrated into UniProtKB/TrEMBL.
DT 14-APR-2009, sequence version 1.
DT 24-JAN-2024, entry version 71.
DE SubName: Full=Putative RNA polymerase, sigma 70 family subunit {ECO:0000313|EMBL:EEF62505.1};
GN ORFNames=Cflav_PD5140 {ECO:0000313|EMBL:EEF62505.1};
OS Pedosphaera parvula (strain Ellin514).
OC Bacteria; Verrucomicrobiota; Verrucomicrobiae; Limisphaerales; Pedosphaera.
OX NCBI_TaxID=320771 {ECO:0000313|EMBL:EEF62505.1, ECO:0000313|Proteomes:UP000003688};
RN [1] {ECO:0000313|EMBL:EEF62505.1, ECO:0000313|Proteomes:UP000003688}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Ellin514 {ECO:0000313|EMBL:EEF62505.1,
RC ECO:0000313|Proteomes:UP000003688};
RX PubMed=21460084; DOI=10.1128/JB.00299-11;
RA Kant R., van Passel M.W., Sangwan P., Palva A., Lucas S., Copeland A.,
RA Lapidus A., Glavina Del Rio T., Dalin E., Tice H., Bruce D., Goodwin L.,
RA Pitluck S., Chertkov O., Larimer F.W., Land M.L., Hauser L., Brettin T.S.,
RA Detter J.C., Han S., de Vos W.M., Janssen P.H., Smidt H.;
RT "Genome sequence of 'Pedosphaera parvula' Ellin514, an aerobic
RT Verrucomicrobial isolate from pasture soil.";
RL J. Bacteriol. 193:2900-2901(2011).
CC -!- SIMILARITY: Belongs to the sigma-70 factor family. ECF subfamily.
CC {ECO:0000256|ARBA:ARBA00010641}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:EEF62505.1}.
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DR EMBL; ABOX02000004; EEF62505.1; -; Genomic_DNA.
DR AlphaFoldDB; B9XC37; -.
DR STRING; 320771.Cflav_PD5140; -.
DR OMA; VQENPRI; -.
DR Proteomes; UP000003688; Unassembled WGS sequence.
DR GO; GO:0019867; C:outer membrane; IEA:InterPro.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.10.1740.10; -; 1.
DR Gene3D; 3.10.20.310; membrane protein fhac; 2.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR010827; BamA/TamA_POTRA.
DR InterPro; IPR039425; RNA_pol_sigma-70-like.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR43133; RNA POLYMERASE ECF-TYPE SIGMA FACTO; 1.
DR PANTHER; PTHR43133:SF8; RNA POLYMERASE SIGMA FACTOR FECI-RELATED; 1.
DR Pfam; PF07244; POTRA; 2.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000003688};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 24..91
FT /note="RNA polymerase sigma-70 region 2"
FT /evidence="ECO:0000259|Pfam:PF04542"
FT DOMAIN 123..172
FT /note="RNA polymerase sigma-70 region 4"
FT /evidence="ECO:0000259|Pfam:PF04545"
FT DOMAIN 368..425
FT /note="POTRA"
FT /evidence="ECO:0000259|Pfam:PF07244"
FT DOMAIN 427..504
FT /note="POTRA"
FT /evidence="ECO:0000259|Pfam:PF07244"
FT COILED 277..314
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 504 AA; 55288 MW; 00A2F9B3136D4E07 CRC64;
MMSDDMTLVR EFAQSNSEKA FTTLVSRHIN LVYSVALRHV RDPHMAEEIT QGVFILFARK
AKSLNPKTII SGWLGRTARY VSADTLKIQR RRQFREQESH MQSILNESDS EVWTQIAPLL
DEALDCLGEK EHNAIVLRFF EGKDLKQVGA SLGMREDAAR MRVNRAVEKL RKFFARKGVT
LSASAIAGAV SANSVQAAPV GLAAAVAAAA FSGTTIATAT ITAATKAMAM TTLQKILVPA
TVAVLAVAGV YEARQAAQMR DAVRTLRQQQ APLLEQIQQL QGERDESAHQ LASLREENER
LTHATGELLR LRGEVGRLRR QSDELKLLRD HNAQLGAPQP DASASKGSAH PPAVAKILIT
HVKQPQEVGE EQIRTNISIK VGDIFDQTAV ARDVRTLYST GLFHNLRVAD NTTDEGVTLN
YLVQENPRIS QIRFAGNSKF TEVELAKLLS SSADKPSDER TLSNDAQKIQ DLYVQSGLSG
AKVKYVFNVD EAVGAGEVIF EIAE
//