ID C0HB28_SALSA Unreviewed; 637 AA.
AC C0HB28;
DT 05-MAY-2009, integrated into UniProtKB/TrEMBL.
DT 05-MAY-2009, sequence version 1.
DT 27-MAR-2024, entry version 65.
DE SubName: Full=TAF6-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 6L {ECO:0000313|EMBL:ACN11247.1, ECO:0000313|RefSeq:NP_001167272.1, ECO:0000313|RefSeq:XP_014010968.1};
GN Name=TAF6L {ECO:0000313|EMBL:ACN11247.1};
GN Synonyms=taf6l {ECO:0000313|RefSeq:NP_001167272.1,
GN ECO:0000313|RefSeq:XP_014010968.1};
OS Salmo salar (Atlantic salmon).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes;
OC Salmonidae; Salmoninae; Salmo.
OX NCBI_TaxID=8030 {ECO:0000313|EMBL:ACN11247.1};
RN [1] {ECO:0000313|EMBL:ACN11247.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Brain {ECO:0000313|EMBL:ACN11247.1};
RG cGRASP (B.F. Koop & W.S. Davidson);
RA Leong J., von Schalburg K., Cooper G., Moore R., Holt R., Davidson W.S.,
RA Koop B.F.;
RL Submitted (FEB-2009) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EMBL:ACN11247.1, ECO:0000313|RefSeq:NP_001167272.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Brain {ECO:0000313|EMBL:ACN11247.1};
RX PubMed=20433749; DOI=10.1186/1471-2164-11-279;
RA Leong J.S., Jantzen S.G., von Schalburg K.R., Cooper G.A., Messmer A.M.,
RA Liao N.Y., Munro S., Moore R., Holt R.A., Jones S.J., Davidson W.S.,
RA Koop B.F.;
RT "Salmo salar and Esox lucius full-length cDNA sequences reveal changes in
RT evolutionary pressures on a post-tetraploidization genome.";
RL BMC Genomics 11:279-279(2010).
RN [3] {ECO:0000313|EMBL:ACN11247.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Brain {ECO:0000313|EMBL:ACN11247.1};
RG cGRASP (B.F. Koop & W.S. Davidson);
RL Submitted (AUG-2010) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|RefSeq:NP_001167272.1, ECO:0000313|RefSeq:XP_014010968.1}
RP IDENTIFICATION.
RC TISSUE=Muscle {ECO:0000313|RefSeq:XP_014010968.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- SIMILARITY: Belongs to the TAF6 family.
CC {ECO:0000256|ARBA:ARBA00007688}.
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DR EMBL; BT059534; ACN11247.1; -; mRNA.
DR RefSeq; NP_001167272.1; NM_001173801.1.
DR RefSeq; XP_014010968.1; XM_014155493.1.
DR STRING; 8030.ENSSSAP00000111069; -.
DR PaxDb; 8030-ENSSSAP00000111069; -.
DR Ensembl; ENSSSAT00000146015; ENSSSAP00000111069; ENSSSAG00000078280.
DR GeneID; 100380516; -.
DR KEGG; sasa:100380516; -.
DR CTD; 10629; -.
DR OMA; YYQHVTR; -.
DR OrthoDB; 3014558at2759; -.
DR Proteomes; UP000087266; Chromosome ssa18.
DR Bgee; ENSSSAG00000078280; Expressed in ovary and 14 other cell types or tissues.
DR GO; GO:0000124; C:SAGA complex; IEA:InterPro.
DR GO; GO:0046695; C:SLIK (SAGA-like) complex; IEA:InterPro.
DR GO; GO:0005669; C:transcription factor TFIID complex; IEA:InterPro.
DR GO; GO:0046982; F:protein heterodimerization activity; IEA:InterPro.
DR GO; GO:0016251; F:RNA polymerase II general transcription initiation factor activity; IEA:InterPro.
DR GO; GO:0006367; P:transcription initiation at RNA polymerase II promoter; IEA:InterPro.
DR CDD; cd08050; TAF6C; 1.
DR Gene3D; 1.10.20.10; Histone, subunit A; 1.
DR Gene3D; 1.25.40.770; TAF6, C-terminal HEAT repeat domain; 1.
DR InterPro; IPR016024; ARM-type_fold.
DR InterPro; IPR009072; Histone-fold.
DR InterPro; IPR037796; TAF6.
DR InterPro; IPR011442; TAF6_C.
DR InterPro; IPR046344; TAF6_C_sf.
DR InterPro; IPR004823; TAF_TATA-bd_Histone-like_dom.
DR PANTHER; PTHR10221:SF22; TAF6-LIKE RNA POLYMERASE II P300_CBP-ASSOCIATED FACTOR-ASSOCIATED FACTOR 65 KDA SUBUNIT 6L; 1.
DR PANTHER; PTHR10221; TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 6; 1.
DR Pfam; PF02969; TAF; 1.
DR Pfam; PF07571; TAF6_C; 1.
DR SMART; SM00803; TAF; 1.
DR SUPFAM; SSF48371; ARM repeat; 1.
DR SUPFAM; SSF47113; Histone-fold; 1.
PE 2: Evidence at transcript level;
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000087266};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 7..70
FT /note="TATA box binding protein associated factor (TAF)
FT histone-like fold"
FT /evidence="ECO:0000259|SMART:SM00803"
FT REGION 377..409
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 461..578
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 466..481
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 490..508
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 525..550
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 637 AA; 69420 MW; BE747804E3E9BF9D CRC64;
MEERRFAEVP RESVKLMAES AGVELSDDVA ALLAEDVCYR LREATQSSSQ FMRHAKRRKL
TVEDFNRALR WSNVEAIAGY GAQDALPFRP IKEGELFFVD DRDINLVELA LATNIPKGCA
ETMVRVNVSY LDGKGNLEPQ GTVPSAVQTL SEDLLKYYQQ ITRAILGEDP HLMKVALLDL
QSNSKIAALL PYFVYVISGV KSVSHDLEQL NRLLHMVKSL VQNPYLYLGS YVRSLVSSVM
YCILEPLAAS INPLNDHWTL RDYAALLLSH IFWTHGDLVS GLYHQILLSL QKVLSDPVRP
LCSHYGAVVG LHALGWKAVE RVLYPHLPAY WANLQAVLDD YSVSNAQVKA DGHKVYGAIL
VAVERLLKMK ALSLSQPAEG SSSAQPGSGG VMGFRVSSPG LSPPPEPLSE AALGIASHLQ
GPGGAGTPWD DWTPVPLPAM YCELYSFFGD SLAVRFSTGP SLGGCPPSAP SQPPDTRKEP
PGPAGNPDTT RKMPQLTANL NISPRQDGSP RTEPAPPSLA ATAPGRSLAR SSSSSSIQRR
NSSSRPGQRS AGPSRDVFTK ARFPPPQTGP PTFSFLIGGR QMGRRCQGRR FQTSFSSPPP
LSTVPPRAYA HKLPVIGRVG KPVRRWTCSH YSLHLPL
//
