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Database: UniProt
Entry: C0PFA7_MAIZE
LinkDB: C0PFA7_MAIZE
Original site: C0PFA7_MAIZE 
ID   C0PFA7_MAIZE            Unreviewed;       576 AA.
AC   C0PFA7; A0A3L6DHA3;
DT   05-MAY-2009, integrated into UniProtKB/TrEMBL.
DT   05-MAY-2009, sequence version 1.
DT   24-JAN-2024, entry version 98.
DE   SubName: Full=Ubiquitin domain-containing protein DSK2b {ECO:0000313|EMBL:AQL06288.1};
GN   ORFNames=ZEAMMB73_Zm00001d047373 {ECO:0000313|EMBL:AQL06288.1};
OS   Zea mays (Maize).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC   Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX   NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN33873.1};
RN   [1] {ECO:0000313|EMBL:ACN33873.1}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=B73 {ECO:0000313|EMBL:ACN33873.1};
RX   PubMed=19936069; DOI=10.1371/journal.pgen.1000740;
RA   Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J.,
RA   Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., Fernandes J.,
RA   Walbot V., Yu Y.;
RT   "Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.";
RL   PLoS Genet. 5:E1000740-E1000740(2009).
RN   [2] {ECO:0000313|EnsemblPlants:Zm00001eb393840_P004, ECO:0000313|Proteomes:UP000007305}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb393840_P004,
RC   ECO:0000313|Proteomes:UP000007305};
RX   PubMed=19965430; DOI=10.1126/science.1178534;
RA   Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA   Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA   Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA   Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., Abbott R.M.,
RA   Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., Gillam B.,
RA   Chen W., Yan L., Higginbotham J., Cardenas M., Waligorski J., Applebaum E.,
RA   Phelps L., Falcone J., Kanchi K., Thane T., Scimone A., Thane N., Henke J.,
RA   Wang T., Ruppert J., Shah N., Rotter K., Hodges J., Ingenthron E.,
RA   Cordes M., Kohlberg S., Sgro J., Delgado B., Mead K., Chinwalla A.,
RA   Leonard S., Crouse K., Collura K., Kudrna D., Currie J., He R.,
RA   Angelova A., Rajasekar S., Mueller T., Lomeli R., Scara G., Ko A.,
RA   Delaney K., Wissotski M., Lopez G., Campos D., Braidotti M., Ashley E.,
RA   Golser W., Kim H., Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A.,
RA   Fan C., Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA   Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA   Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA   Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA   Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA   Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., Jeddeloh J.A.,
RA   Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., Nagel D.H., McCann M.C.,
RA   SanMiguel P., Myers A.M., Nettleton D., Nguyen J., Penning B.W.,
RA   Ponnala L., Schneider K.L., Schwartz D.C., Sharma A., Soderlund C.,
RA   Springer N.M., Sun Q., Wang H., Waterman M., Westerman R., Wolfgruber T.K.,
RA   Yang L., Yu Y., Zhang L., Zhou S., Zhu Q., Bennetzen J.L., Dawe R.K.,
RA   Jiang J., Jiang N., Presting G.G., Wessler S.R., Aluru S.,
RA   Martienssen R.A., Clifton S.W., McCombie W.R., Wing R.A., Wilson R.K.;
RT   "The B73 maize genome: complexity, diversity, and dynamics.";
RL   Science 326:1112-1115(2009).
RN   [3] {ECO:0000313|EMBL:AQL06288.1}
RP   NUCLEOTIDE SEQUENCE.
RC   TISSUE=Seedling {ECO:0000313|EMBL:AQL06288.1};
RG   Maize Genome Sequencing Project;
RA   Ware D.;
RT   "Update maize B73 reference genome by single molecule sequencing
RT   technologies.";
RL   Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN   [4] {ECO:0000313|EnsemblPlants:Zm00001eb393840_P004}
RP   IDENTIFICATION.
RC   STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb393840_P004};
RG   EnsemblPlants;
RL   Submitted (MAY-2021) to UniProtKB.
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DR   EMBL; BT066976; ACN33873.1; -; mRNA.
DR   EMBL; BT088304; ACR38657.1; -; mRNA.
DR   EMBL; CM000785; AQL06288.1; -; Genomic_DNA.
DR   RefSeq; NP_001148622.1; NM_001155150.1.
DR   AlphaFoldDB; C0PFA7; -.
DR   SMR; C0PFA7; -.
DR   IntAct; C0PFA7; 40.
DR   STRING; 4577.C0PFA7; -.
DR   PaxDb; 4577-GRMZM2G170843_P02; -.
DR   EnsemblPlants; Zm00001eb393840_T004; Zm00001eb393840_P004; Zm00001eb393840.
DR   GeneID; 100282238; -.
DR   Gramene; Zm00001eb393840_T004; Zm00001eb393840_P004; Zm00001eb393840.
DR   KEGG; zma:100282238; -.
DR   eggNOG; KOG0010; Eukaryota.
DR   HOGENOM; CLU_024293_4_0_1; -.
DR   OMA; RDMMNAP; -.
DR   Proteomes; UP000007305; Chromosome 9.
DR   ExpressionAtlas; C0PFA7; baseline and differential.
DR   GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR   GO; GO:0005634; C:nucleus; IEA:UniProt.
DR   GO; GO:0031593; F:polyubiquitin modification-dependent protein binding; IBA:GO_Central.
DR   GO; GO:0006511; P:ubiquitin-dependent protein catabolic process; IBA:GO_Central.
DR   CDD; cd14399; UBA_PLICs; 1.
DR   CDD; cd16106; Ubl_Dsk2p_like; 1.
DR   Gene3D; 1.10.260.100; -; 1.
DR   Gene3D; 1.10.8.10; DNA helicase RuvA subunit, C-terminal domain; 1.
DR   InterPro; IPR006636; STI1_HS-bd.
DR   InterPro; IPR015940; UBA.
DR   InterPro; IPR009060; UBA-like_sf.
DR   InterPro; IPR015496; Ubiquilin.
DR   InterPro; IPR000626; Ubiquitin-like_dom.
DR   InterPro; IPR029071; Ubiquitin-like_domsf.
DR   PANTHER; PTHR10677:SF28; OS10G0542200 PROTEIN; 1.
DR   PANTHER; PTHR10677; UBIQUILIN; 1.
DR   Pfam; PF00627; UBA; 1.
DR   Pfam; PF00240; ubiquitin; 1.
DR   SMART; SM00727; STI1; 4.
DR   SMART; SM00165; UBA; 1.
DR   SMART; SM00213; UBQ; 1.
DR   SUPFAM; SSF46934; UBA-like; 1.
DR   SUPFAM; SSF54236; Ubiquitin-like; 1.
DR   PROSITE; PS50030; UBA; 1.
DR   PROSITE; PS50053; UBIQUITIN_2; 1.
PE   1: Evidence at protein level;
KW   Proteomics identification {ECO:0007829|PeptideAtlas:C0PFA7};
KW   Reference proteome {ECO:0000313|Proteomes:UP000007305}.
FT   DOMAIN          26..95
FT                   /note="Ubiquitin-like"
FT                   /evidence="ECO:0000259|PROSITE:PS50053"
FT   DOMAIN          529..573
FT                   /note="UBA"
FT                   /evidence="ECO:0000259|PROSITE:PS50030"
FT   REGION          266..405
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          481..502
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        266..346
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   576 AA;  59691 MW;  744603D17D4A7377 CRC64;
     MASGGEGAGS GESPPAASVE AAAVEATLHI RCANGSKFTV QTDLGATVGA FKEVLSGSCG
     VPAPQQRLIY KGRILKDEQT LDSYGVETDH TIHLVRGVAT PAASSAPAAA NPLASFTPSS
     GPAGGLGGLF PGVDAPGNDR PSGIFRPGFP ELEQVEQHLS QNPNLMREIM NMPAMQNLMN
     NPDLIRNMIM NNPQMREIMD RNPDLAHVLN DPSVLRQTLE AARNPEIMRE MMRNTDRAMS
     NIESSPEGFN MLRRMYETVQ EPFLNATTMG GEGSTASNPF SALLGNQGSS QPGQGQPATN
     APTTGSESTT GTPAPNTNPL PNPWSTNAGS AQGATRTPSG NARTGGVGGT GATGGLGGLG
     SPELSSLLGG LAGSPRTGSA GGLGGSGSPD LGSMLGGSPD VSPFSQMLQN PAMIQMMQNI
     MSDPQTMNQL LNLNPNARNL MESNTHMREM FQNPEFLRQL TSPETLQQLL SFQQTLLGQL
     GQHQPSQGGN NAGSATGTRG NPSLDTLMSM LSGLGSGGGL GVPNTSSVPP EELYATQLTQ
     LQEMGFIDTA ENIQALVATA GNVHAAVERL LGNLGQ
//
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