ID C0PFA7_MAIZE Unreviewed; 576 AA.
AC C0PFA7; A0A3L6DHA3;
DT 05-MAY-2009, integrated into UniProtKB/TrEMBL.
DT 05-MAY-2009, sequence version 1.
DT 24-JAN-2024, entry version 98.
DE SubName: Full=Ubiquitin domain-containing protein DSK2b {ECO:0000313|EMBL:AQL06288.1};
GN ORFNames=ZEAMMB73_Zm00001d047373 {ECO:0000313|EMBL:AQL06288.1};
OS Zea mays (Maize).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea.
OX NCBI_TaxID=4577 {ECO:0000313|EMBL:ACN33873.1};
RN [1] {ECO:0000313|EMBL:ACN33873.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=B73 {ECO:0000313|EMBL:ACN33873.1};
RX PubMed=19936069; DOI=10.1371/journal.pgen.1000740;
RA Soderlund C., Descour A., Kudrna D., Bomhoff M., Boyd L., Currie J.,
RA Angelova A., Collura K., Wissotski M., Ashley E., Morrow D., Fernandes J.,
RA Walbot V., Yu Y.;
RT "Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.";
RL PLoS Genet. 5:E1000740-E1000740(2009).
RN [2] {ECO:0000313|EnsemblPlants:Zm00001eb393840_P004, ECO:0000313|Proteomes:UP000007305}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb393840_P004,
RC ECO:0000313|Proteomes:UP000007305};
RX PubMed=19965430; DOI=10.1126/science.1178534;
RA Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S.,
RA Liang C., Zhang J., Fulton L., Graves T.A., Minx P., Reily A.D.,
RA Courtney L., Kruchowski S.S., Tomlinson C., Strong C., Delehaunty K.,
RA Fronick C., Courtney B., Rock S.M., Belter E., Du F., Kim K., Abbott R.M.,
RA Cotton M., Levy A., Marchetto P., Ochoa K., Jackson S.M., Gillam B.,
RA Chen W., Yan L., Higginbotham J., Cardenas M., Waligorski J., Applebaum E.,
RA Phelps L., Falcone J., Kanchi K., Thane T., Scimone A., Thane N., Henke J.,
RA Wang T., Ruppert J., Shah N., Rotter K., Hodges J., Ingenthron E.,
RA Cordes M., Kohlberg S., Sgro J., Delgado B., Mead K., Chinwalla A.,
RA Leonard S., Crouse K., Collura K., Kudrna D., Currie J., He R.,
RA Angelova A., Rajasekar S., Mueller T., Lomeli R., Scara G., Ko A.,
RA Delaney K., Wissotski M., Lopez G., Campos D., Braidotti M., Ashley E.,
RA Golser W., Kim H., Lee S., Lin J., Dujmic Z., Kim W., Talag J., Zuccolo A.,
RA Fan C., Sebastian A., Kramer M., Spiegel L., Nascimento L., Zutavern T.,
RA Miller B., Ambroise C., Muller S., Spooner W., Narechania A., Ren L.,
RA Wei S., Kumari S., Faga B., Levy M.J., McMahan L., Van Buren P.,
RA Vaughn M.W., Ying K., Yeh C.-T., Emrich S.J., Jia Y., Kalyanaraman A.,
RA Hsia A.-P., Barbazuk W.B., Baucom R.S., Brutnell T.P., Carpita N.C.,
RA Chaparro C., Chia J.-M., Deragon J.-M., Estill J.C., Fu Y., Jeddeloh J.A.,
RA Han Y., Lee H., Li P., Lisch D.R., Liu S., Liu Z., Nagel D.H., McCann M.C.,
RA SanMiguel P., Myers A.M., Nettleton D., Nguyen J., Penning B.W.,
RA Ponnala L., Schneider K.L., Schwartz D.C., Sharma A., Soderlund C.,
RA Springer N.M., Sun Q., Wang H., Waterman M., Westerman R., Wolfgruber T.K.,
RA Yang L., Yu Y., Zhang L., Zhou S., Zhu Q., Bennetzen J.L., Dawe R.K.,
RA Jiang J., Jiang N., Presting G.G., Wessler S.R., Aluru S.,
RA Martienssen R.A., Clifton S.W., McCombie W.R., Wing R.A., Wilson R.K.;
RT "The B73 maize genome: complexity, diversity, and dynamics.";
RL Science 326:1112-1115(2009).
RN [3] {ECO:0000313|EMBL:AQL06288.1}
RP NUCLEOTIDE SEQUENCE.
RC TISSUE=Seedling {ECO:0000313|EMBL:AQL06288.1};
RG Maize Genome Sequencing Project;
RA Ware D.;
RT "Update maize B73 reference genome by single molecule sequencing
RT technologies.";
RL Submitted (DEC-2015) to the EMBL/GenBank/DDBJ databases.
RN [4] {ECO:0000313|EnsemblPlants:Zm00001eb393840_P004}
RP IDENTIFICATION.
RC STRAIN=cv. B73 {ECO:0000313|EnsemblPlants:Zm00001eb393840_P004};
RG EnsemblPlants;
RL Submitted (MAY-2021) to UniProtKB.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; BT066976; ACN33873.1; -; mRNA.
DR EMBL; BT088304; ACR38657.1; -; mRNA.
DR EMBL; CM000785; AQL06288.1; -; Genomic_DNA.
DR RefSeq; NP_001148622.1; NM_001155150.1.
DR AlphaFoldDB; C0PFA7; -.
DR SMR; C0PFA7; -.
DR IntAct; C0PFA7; 40.
DR STRING; 4577.C0PFA7; -.
DR PaxDb; 4577-GRMZM2G170843_P02; -.
DR EnsemblPlants; Zm00001eb393840_T004; Zm00001eb393840_P004; Zm00001eb393840.
DR GeneID; 100282238; -.
DR Gramene; Zm00001eb393840_T004; Zm00001eb393840_P004; Zm00001eb393840.
DR KEGG; zma:100282238; -.
DR eggNOG; KOG0010; Eukaryota.
DR HOGENOM; CLU_024293_4_0_1; -.
DR OMA; RDMMNAP; -.
DR Proteomes; UP000007305; Chromosome 9.
DR ExpressionAtlas; C0PFA7; baseline and differential.
DR GO; GO:0005829; C:cytosol; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IEA:UniProt.
DR GO; GO:0031593; F:polyubiquitin modification-dependent protein binding; IBA:GO_Central.
DR GO; GO:0006511; P:ubiquitin-dependent protein catabolic process; IBA:GO_Central.
DR CDD; cd14399; UBA_PLICs; 1.
DR CDD; cd16106; Ubl_Dsk2p_like; 1.
DR Gene3D; 1.10.260.100; -; 1.
DR Gene3D; 1.10.8.10; DNA helicase RuvA subunit, C-terminal domain; 1.
DR InterPro; IPR006636; STI1_HS-bd.
DR InterPro; IPR015940; UBA.
DR InterPro; IPR009060; UBA-like_sf.
DR InterPro; IPR015496; Ubiquilin.
DR InterPro; IPR000626; Ubiquitin-like_dom.
DR InterPro; IPR029071; Ubiquitin-like_domsf.
DR PANTHER; PTHR10677:SF28; OS10G0542200 PROTEIN; 1.
DR PANTHER; PTHR10677; UBIQUILIN; 1.
DR Pfam; PF00627; UBA; 1.
DR Pfam; PF00240; ubiquitin; 1.
DR SMART; SM00727; STI1; 4.
DR SMART; SM00165; UBA; 1.
DR SMART; SM00213; UBQ; 1.
DR SUPFAM; SSF46934; UBA-like; 1.
DR SUPFAM; SSF54236; Ubiquitin-like; 1.
DR PROSITE; PS50030; UBA; 1.
DR PROSITE; PS50053; UBIQUITIN_2; 1.
PE 1: Evidence at protein level;
KW Proteomics identification {ECO:0007829|PeptideAtlas:C0PFA7};
KW Reference proteome {ECO:0000313|Proteomes:UP000007305}.
FT DOMAIN 26..95
FT /note="Ubiquitin-like"
FT /evidence="ECO:0000259|PROSITE:PS50053"
FT DOMAIN 529..573
FT /note="UBA"
FT /evidence="ECO:0000259|PROSITE:PS50030"
FT REGION 266..405
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 481..502
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 266..346
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 576 AA; 59691 MW; 744603D17D4A7377 CRC64;
MASGGEGAGS GESPPAASVE AAAVEATLHI RCANGSKFTV QTDLGATVGA FKEVLSGSCG
VPAPQQRLIY KGRILKDEQT LDSYGVETDH TIHLVRGVAT PAASSAPAAA NPLASFTPSS
GPAGGLGGLF PGVDAPGNDR PSGIFRPGFP ELEQVEQHLS QNPNLMREIM NMPAMQNLMN
NPDLIRNMIM NNPQMREIMD RNPDLAHVLN DPSVLRQTLE AARNPEIMRE MMRNTDRAMS
NIESSPEGFN MLRRMYETVQ EPFLNATTMG GEGSTASNPF SALLGNQGSS QPGQGQPATN
APTTGSESTT GTPAPNTNPL PNPWSTNAGS AQGATRTPSG NARTGGVGGT GATGGLGGLG
SPELSSLLGG LAGSPRTGSA GGLGGSGSPD LGSMLGGSPD VSPFSQMLQN PAMIQMMQNI
MSDPQTMNQL LNLNPNARNL MESNTHMREM FQNPEFLRQL TSPETLQQLL SFQQTLLGQL
GQHQPSQGGN NAGSATGTRG NPSLDTLMSM LSGLGSGGGL GVPNTSSVPP EELYATQLTQ
LQEMGFIDTA ENIQALVATA GNVHAAVERL LGNLGQ
//