ID C1EFZ6_MICCC Unreviewed; 471 AA.
AC C1EFZ6;
DT 26-MAY-2009, integrated into UniProtKB/TrEMBL.
DT 26-MAY-2009, sequence version 1.
DT 24-JAN-2024, entry version 57.
DE RecName: Full=G-patch domain-containing protein {ECO:0000259|PROSITE:PS50174};
GN ORFNames=MICPUN_63459 {ECO:0000313|EMBL:ACO66935.1};
OS Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) (Picoplanktonic
OS green alga).
OC Eukaryota; Viridiplantae; Chlorophyta; Mamiellophyceae; Mamiellales;
OC Mamiellaceae; Micromonas.
OX NCBI_TaxID=296587 {ECO:0000313|EMBL:ACO66935.1, ECO:0000313|Proteomes:UP000002009};
RN [1] {ECO:0000313|EMBL:ACO66935.1, ECO:0000313|Proteomes:UP000002009}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=RCC299 / NOUM17 {ECO:0000313|Proteomes:UP000002009};
RX PubMed=19359590; DOI=10.1126/science.1167222;
RA Worden A.Z., Lee J.H., Mock T., Rouze P., Simmons M.P., Aerts A.L.,
RA Allen A.E., Cuvelier M.L., Derelle E., Everett M.V., Foulon E.,
RA Grimwood J., Gundlach H., Henrissat B., Napoli C., McDonald S.M.,
RA Parker M.S., Rombauts S., Salamov A., Von Dassow P., Badger J.H.,
RA Coutinho P.M., Demir E., Dubchak I., Gentemann C., Eikrem W., Gready J.E.,
RA John U., Lanier W., Lindquist E.A., Lucas S., Mayer K.F., Moreau H.,
RA Not F., Otillar R., Panaud O., Pangilinan J., Paulsen I., Piegu B.,
RA Poliakov A., Robbens S., Schmutz J., Toulza E., Wyss T., Zelensky A.,
RA Zhou K., Armbrust E.V., Bhattacharya D., Goodenough U.W., Van de Peer Y.,
RA Grigoriev I.V.;
RT "Green evolution and dynamic adaptations revealed by genomes of the marine
RT picoeukaryotes Micromonas.";
RL Science 324:268-272(2009).
CC -!- SUBCELLULAR LOCATION: Plastid, chloroplast
CC {ECO:0000256|PIRNR:PIRNR031066}.
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DR EMBL; CP001331; ACO66935.1; -; Genomic_DNA.
DR RefSeq; XP_002505677.1; XM_002505631.1.
DR AlphaFoldDB; C1EFZ6; -.
DR STRING; 296587.C1EFZ6; -.
DR GeneID; 8248360; -.
DR KEGG; mis:MICPUN_63459; -.
DR eggNOG; KOG1996; Eukaryota.
DR InParanoid; C1EFZ6; -.
DR OMA; FDKHRTS; -.
DR OrthoDB; 1343740at2759; -.
DR Proteomes; UP000002009; Chromosome 13.
DR GO; GO:0009507; C:chloroplast; IEA:UniProtKB-SubCell.
DR GO; GO:0003723; F:RNA binding; IEA:UniProtKB-UniRule.
DR GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IEA:UniProtKB-UniRule.
DR GO; GO:0043484; P:regulation of RNA splicing; IEA:UniProtKB-UniRule.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR000467; G_patch_dom.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR040052; RBM17.
DR InterPro; IPR003954; RRM_dom_euk.
DR PANTHER; PTHR13288:SF8; SPLICING FACTOR 45; 1.
DR PANTHER; PTHR13288; SPLICING FACTOR 45 SPF45; 1.
DR Pfam; PF01585; G-patch; 1.
DR PIRSF; PIRSF031066; Splicing_factor_SPF45; 1.
DR SMART; SM00443; G_patch; 1.
DR SMART; SM00361; RRM_1; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
DR PROSITE; PS50174; G_PATCH; 1.
PE 4: Predicted;
KW Chloroplast {ECO:0000256|PIRNR:PIRNR031066};
KW mRNA processing {ECO:0000256|PIRNR:PIRNR031066};
KW mRNA splicing {ECO:0000256|PIRNR:PIRNR031066};
KW Plastid {ECO:0000256|PIRNR:PIRNR031066};
KW Reference proteome {ECO:0000313|Proteomes:UP000002009};
KW RNA-binding {ECO:0000256|PIRNR:PIRNR031066}.
FT DOMAIN 264..310
FT /note="G-patch"
FT /evidence="ECO:0000259|PROSITE:PS50174"
FT REGION 1..114
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 168..213
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 236..262
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 28..46
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 85..99
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 168..199
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 241..256
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 471 AA; 49242 MW; 550E2578F4381FB1 CRC64;
MGLFGDLPSA KDGSSRGDGG GSSETPAKRS DGAATTPGST AGKTGGWSGA GSALRAPPRK
SPALLNPQML KAQAAALRAQ QAKLARQKEA TSSDAPGGSS AVRTPGARPS ATATRVVVTK
TGIGGGAVPE PSAATYGTLS AEVADEYQPG KPNSYEDVVR ARARRVATEQ AARTRERQRV
ELERQRRELE EERRTAQKAA GTAPDRSSLN VTGEEAFARR ATVRFGKVEP AASKLLAASN
EVEPERAERT PEPQKPPAPV KDKGLTLAQK MMEKMGWKEG SGLGKDGQGM TTPLMAQKDG
IRSGIIVNAP EMFPNRSTII GEVSAEGDGA HTLLGAPAFV SSGSSLAGSA VVPAVDEGDK
PATPTRVLLL RNLTGPGEVD GDLEDEVAEE CERFGAVVRV VIFEVTDAGF PAPEAVRIFA
EFVEAESAER CRLEMDGRFF GGRTVRATSY DESKFFANDL GPQPGEKAVG S
//
