ID C3H8_ORYSJ Reviewed; 462 AA.
AC Q5ZDJ6; B7F419; Q5ZDJ7;
DT 02-SEP-2008, integrated into UniProtKB/Swiss-Prot.
DT 02-SEP-2008, sequence version 2.
DT 27-MAR-2024, entry version 103.
DE RecName: Full=Zinc finger CCCH domain-containing protein 8;
DE Short=OsC3H8;
GN OrderedLocusNames=Os01g0616400, LOC_Os01g42970;
GN ORFNames=P0686E09.13-1, P0686E09.13-2;
OS Oryza sativa subsp. japonica (Rice).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
OX NCBI_TaxID=39947;
RN [1]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=12447438; DOI=10.1038/nature01184;
RA Sasaki T., Matsumoto T., Yamamoto K., Sakata K., Baba T., Katayose Y.,
RA Wu J., Niimura Y., Cheng Z., Nagamura Y., Antonio B.A., Kanamori H.,
RA Hosokawa S., Masukawa M., Arikawa K., Chiden Y., Hayashi M., Okamoto M.,
RA Ando T., Aoki H., Arita K., Hamada M., Harada C., Hijishita S., Honda M.,
RA Ichikawa Y., Idonuma A., Iijima M., Ikeda M., Ikeno M., Ito S., Ito T.,
RA Ito Y., Ito Y., Iwabuchi A., Kamiya K., Karasawa W., Katagiri S.,
RA Kikuta A., Kobayashi N., Kono I., Machita K., Maehara T., Mizuno H.,
RA Mizubayashi T., Mukai Y., Nagasaki H., Nakashima M., Nakama Y.,
RA Nakamichi Y., Nakamura M., Namiki N., Negishi M., Ohta I., Ono N., Saji S.,
RA Sakai K., Shibata M., Shimokawa T., Shomura A., Song J., Takazaki Y.,
RA Terasawa K., Tsuji K., Waki K., Yamagata H., Yamane H., Yoshiki S.,
RA Yoshihara R., Yukawa K., Zhong H., Iwama H., Endo T., Ito H., Hahn J.H.,
RA Kim H.-I., Eun M.-Y., Yano M., Jiang J., Gojobori T.;
RT "The genome sequence and structure of rice chromosome 1.";
RL Nature 420:312-316(2002).
RN [2]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Nipponbare;
RX PubMed=16100779; DOI=10.1038/nature03895;
RG International rice genome sequencing project (IRGSP);
RT "The map-based sequence of the rice genome.";
RL Nature 436:793-800(2005).
RN [3]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=18089549; DOI=10.1093/nar/gkm978;
RG The rice annotation project (RAP);
RT "The rice annotation project database (RAP-DB): 2008 update.";
RL Nucleic Acids Res. 36:D1028-D1033(2008).
RN [4]
RP GENOME REANNOTATION.
RC STRAIN=cv. Nipponbare;
RX PubMed=24280374; DOI=10.1186/1939-8433-6-4;
RA Kawahara Y., de la Bastide M., Hamilton J.P., Kanamori H., McCombie W.R.,
RA Ouyang S., Schwartz D.C., Tanaka T., Wu J., Zhou S., Childs K.L.,
RA Davidson R.M., Lin H., Quesada-Ocampo L., Vaillancourt B., Sakai H.,
RA Lee S.S., Kim J., Numa H., Itoh T., Buell C.R., Matsumoto T.;
RT "Improvement of the Oryza sativa Nipponbare reference genome using next
RT generation sequence and optical map data.";
RL Rice 6:4-4(2013).
RN [5]
RP NUCLEOTIDE SEQUENCE [LARGE SCALE MRNA] (ISOFORMS 1 AND 2).
RC STRAIN=cv. Nipponbare;
RX PubMed=12869764; DOI=10.1126/science.1081288;
RG The rice full-length cDNA consortium;
RT "Collection, mapping, and annotation of over 28,000 cDNA clones from
RT japonica rice.";
RL Science 301:376-379(2003).
RN [6]
RP NOMENCLATURE.
RX PubMed=18221561; DOI=10.1186/1471-2164-9-44;
RA Wang D., Guo Y., Wu C., Yang G., Li Y., Zheng C.;
RT "Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.";
RL BMC Genomics 9:44-44(2008).
CC -!- ALTERNATIVE PRODUCTS:
CC Event=Alternative splicing; Named isoforms=2;
CC Name=1;
CC IsoId=Q5ZDJ6-1; Sequence=Displayed;
CC Name=2;
CC IsoId=Q5ZDJ6-2; Sequence=VSP_035016;
CC -!- MISCELLANEOUS: [Isoform 2]: May be due to a competing acceptor splice
CC site. {ECO:0000305}.
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DR EMBL; AP002897; BAD61280.1; -; Genomic_DNA.
DR EMBL; AP002897; BAD61281.1; -; Genomic_DNA.
DR EMBL; AP008207; BAF05491.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS73169.1; -; Genomic_DNA.
DR EMBL; AP014957; BAS73170.1; -; Genomic_DNA.
DR EMBL; AK111682; BAG99366.1; -; mRNA.
DR EMBL; AK112116; -; NOT_ANNOTATED_CDS; mRNA.
DR RefSeq; XP_015622282.1; XM_015766796.1.
DR RefSeq; XP_015622283.1; XM_015766797.1.
DR AlphaFoldDB; Q5ZDJ6; -.
DR STRING; 39947.Q5ZDJ6; -.
DR PaxDb; 39947-Q5ZDJ6; -.
DR EnsemblPlants; Os01t0616400-01; Os01t0616400-01; Os01g0616400. [Q5ZDJ6-2]
DR EnsemblPlants; Os01t0616400-02; Os01t0616400-02; Os01g0616400. [Q5ZDJ6-1]
DR GeneID; 4326652; -.
DR Gramene; Os01t0616400-01; Os01t0616400-01; Os01g0616400. [Q5ZDJ6-2]
DR Gramene; Os01t0616400-02; Os01t0616400-02; Os01g0616400. [Q5ZDJ6-1]
DR KEGG; osa:4326652; -.
DR eggNOG; KOG1677; Eukaryota.
DR InParanoid; Q5ZDJ6; -.
DR OMA; QPIMGSH; -.
DR OrthoDB; 1561223at2759; -.
DR Proteomes; UP000000763; Chromosome 1.
DR Proteomes; UP000059680; Chromosome 1.
DR ExpressionAtlas; Q5ZDJ6; baseline and differential.
DR Genevisible; Q5ZDJ6; OS.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR Gene3D; 2.30.30.1190; -; 4.
DR Gene3D; 4.10.1000.10; Zinc finger, CCCH-type; 1.
DR InterPro; IPR000571; Znf_CCCH.
DR InterPro; IPR036855; Znf_CCCH_sf.
DR PANTHER; PTHR12506:SF77; C3H1-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR12506; PROTEIN PHOSPHATASE RELATED; 1.
DR Pfam; PF00642; zf-CCCH; 6.
DR SMART; SM00356; ZnF_C3H1; 6.
DR SUPFAM; SSF90229; CCCH zinc finger; 5.
DR PROSITE; PS50103; ZF_C3H1; 6.
PE 2: Evidence at transcript level;
KW Alternative splicing; DNA-binding; Metal-binding; Reference proteome;
KW Repeat; Zinc; Zinc-finger.
FT CHAIN 1..462
FT /note="Zinc finger CCCH domain-containing protein 8"
FT /id="PRO_0000346805"
FT ZN_FING 105..133
FT /note="C3H1-type 1"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 156..184
FT /note="C3H1-type 2"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 209..237
FT /note="C3H1-type 3"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 288..316
FT /note="C3H1-type 4"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 367..395
FT /note="C3H1-type 5"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT ZN_FING 422..450
FT /note="C3H1-type 6"
FT /evidence="ECO:0000255|PROSITE-ProRule:PRU00723"
FT VAR_SEQ 145
FT /note="Missing (in isoform 2)"
FT /evidence="ECO:0000303|PubMed:12869764"
FT /id="VSP_035016"
SQ SEQUENCE 462 AA; 50358 MW; 31B7CBCFCE7229CC CRC64;
MSDPFYPHGH GGAAGGEGAA AAGYSSYEVD LIAARYGGRP LANPSSAAAD LDARLAGARR
SMGVLYHQPI MGSHSTVEQI EALYSSNTMT KRPRLESSLP IYPQRPGEKD CAFYMMTRTC
KFGGSCKFDH PQWVPEGGIP NWKEQAANVE ESYPEQEGEP DCPFFMKTGK CKFGSKCKFN
HPKEKVNALA SGNTNDKHLI ADSSILPVRP SEPLCSFYAK TGKCKFRAMC KFNHPKDIEI
PSSQNEPESA VTVEGETDIG SAADSVSAKM QTPVAAAQEF NSKGLPMRPG EVDCPFYMKM
GSCKFGSTCR FNHPDRLVLN FPLPLGQTIL PTPESMLLNS SANFMQGFDF HAAHMPVGPG
PVTYPQRPGA TVCDFYMKTG FCKFADRCKF HHPIDRSAPD PSANWEPAEE SVQLTLAGLP
RREDAVVCAF YMKTGVCKFG MQCKFDHPPP QEAIAKVSNS GS
//
