ID C3XWF6_BRAFL Unreviewed; 1410 AA.
AC C3XWF6;
DT 28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT 28-JUL-2009, sequence version 1.
DT 24-JAN-2024, entry version 92.
DE SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEN67690.1};
GN ORFNames=BRAFLDRAFT_63636 {ECO:0000313|EMBL:EEN67690.1};
OS Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes;
OC Branchiostomatidae; Branchiostoma.
OX NCBI_TaxID=7739;
RN [1] {ECO:0000313|EMBL:EEN67690.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN67690.1};
RC TISSUE=Testes {ECO:0000313|EMBL:EEN67690.1};
RX PubMed=18563158; DOI=10.1038/nature06967;
RG US DOE Joint Genome Institute (JGI-PGF);
RA Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J.,
RA Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J., Kapitonov V.V.,
RA Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A.,
RA Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T.,
RA Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA Satoh N., Rokhsar D.S.;
RT "The amphioxus genome and the evolution of the chordate karyotype.";
RL Nature 453:1064-1071(2008).
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DR EMBL; GG666471; EEN67690.1; -; Genomic_DNA.
DR RefSeq; XP_002611680.1; XM_002611634.1.
DR STRING; 7739.C3XWF6; -.
DR eggNOG; KOG3561; Eukaryota.
DR InParanoid; C3XWF6; -.
DR GO; GO:1990513; C:CLOCK-BMAL transcription complex; IBA:GO_Central.
DR GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR GO; GO:0032922; P:circadian regulation of gene expression; IBA:GO_Central.
DR GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR CDD; cd00130; PAS; 2.
DR CDD; cd11655; rap1_myb-like; 1.
DR Gene3D; 4.10.280.10; Helix-loop-helix DNA-binding domain; 1.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.30.450.20; PAS domain; 2.
DR InterPro; IPR011598; bHLH_dom.
DR InterPro; IPR047230; CLOCK-like.
DR InterPro; IPR036638; HLH_DNA-bd_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR001067; Nuc_translocat.
DR InterPro; IPR001610; PAC.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR015010; Rap1_Myb_dom.
DR PANTHER; PTHR46055; CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT; 1.
DR PANTHER; PTHR46055:SF3; CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT; 1.
DR Pfam; PF00010; HLH; 1.
DR Pfam; PF08914; Myb_DNA-bind_2; 1.
DR Pfam; PF00989; PAS; 1.
DR Pfam; PF14598; PAS_11; 1.
DR PRINTS; PR00785; NCTRNSLOCATR.
DR SMART; SM00353; HLH; 1.
DR SMART; SM00086; PAC; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF47459; HLH, helix-loop-helix DNA-binding domain; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR PROSITE; PS50888; BHLH; 1.
DR PROSITE; PS50112; PAS; 1.
PE 4: Predicted;
KW Activator {ECO:0000256|ARBA:ARBA00023159};
KW Biological rhythms {ECO:0000256|ARBA:ARBA00023108};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT DOMAIN 586..636
FT /note="BHLH"
FT /evidence="ECO:0000259|PROSITE:PS50888"
FT DOMAIN 659..715
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT REGION 140..327
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 348..411
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 969..1013
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1030..1073
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1315..1344
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1364..1384
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 1127..1154
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 140..173
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 194..283
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 348..376
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 395..410
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1330..1344
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1410 AA; 157086 MW; 7360111E541D2B3A CRC64;
MFLQHSFTVS VQHGGGLLTS RSRDENSIKL AEEGQSTRDC DTYSHRYILD CVEKNTLLPL
EQYNRQKFLR SEQINILKYV AEHSDPTRPV GGNKIWKEMA LYKITKHSWH AMRDHYLKHL
KGKEHLYQLS DRLKYSRIQF RKDASPTTDD DGDKDAPRDA EEHQSEHSNK DDSINIDMFN
SSDEEEKESG DPTEPTEVSS AQGSSAQATS AQGSSAKMTT AQATSTQGTS AKTTSAQATS
AQATSSQASS AQASSAQATS AKVNSAQLTS AQVDSTLAST TLRRSPLKRR GKVTPVEEKT
QGACGRSDGA GVQKESHEVP ASSDDMDDHL AVLAVDVKKK QVKEEAILPE KRARLNPNDG
KNGDIQDVKQ DKHQQVGSDA VQEPASAAEA QEELREEDGM LEDEPRGDEE DEDHLLTVLE
GCVKIKELMT EFSLSLLMVT RALYYHRGDV GATRTFLRTG KKTHEKRIQR VLDFNNAANF
IVTNLKIIDS ITRCYDEGNL HSPLKWDDES SFMYDDMEED EKDRNKSKKA CNMAMEGSHR
VAQVYHDFRL EQSSWRKKME ESAGWVPGYL AHDMVFQTYY VSAYELERQS RNRSEKKRRD
QFNILINELC SMVSSNNRKM DKSSVLQSTI AFLKRNKEIT AQSEANEIKE NWKPPFLTNE
EFSQLMLDAT NGFMLAINKQ GKILYVSENV TSLLGHLPND LVGNTLGDMV HEKEKVQTCN
LLTHHTLHLD QTESDYGHDK HLSFSCHFVR GKIDPTEEPA YECIKLSGSY RRSLSGKISS
TCKVEKDNQK TKGGVGGSGG DEVVLVMTAK LLAPLFLKEM SVVDETKREF TSRHSLEWKF
LFLDHRAPPI IGYLPFEVLG TSGYDYYHVD DLDRISICHE QLMQCGEGTS CCYRFLTKGQ
QWIWLQTRYY ITYNQWNSKP EFIVCTHTVV SYSEVCNKLR QELGLSDSGD NVDMSVSFGT
LKRSLSNSSL AVSEKSRKSQ RSSAPDRSPH GSAEMHSVQV GETTPGSVQG EDFPDITKQY
KTLNDLLTTK TRPVSSHSSS TSVQQPSNPS QRPQPSSSHH SAPQTVPSAA QSSLAKFSQY
RVADEISSTG TLTENDAMTT MSESVYHSPP SEMPMGALIR PPQLRLQEQL LQRHQALQDT
IRRQQEELQL LRQQILMQCP MVTDPGVLTA MSVQQNSLPY PPSSSLPTPA MPYPPSQAAP
MTNSMQQVPQ ASLLTSQSNM ANMPGGVFVQ GQMSSILQAP PQGGQYGAGQ VHAMGIIQGQ
FVASQGVQPG PSSSGLASQM DNVSRFDFGQ NKTSVVTNPT SKGSLMTTAQ LLSPQVHMMP
PPQSPTGVPA PGPAAQTSKS SRPLTVAQRL QMQQQQRLQQ ANLQSQVQQQ PQQQQQQQQQ
QAQLAAANFP YYIHQMYQRQ DSDTHSQHSQ
//