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Database: UniProt
Entry: C3XWF6_BRAFL
LinkDB: C3XWF6_BRAFL
Original site: C3XWF6_BRAFL 
ID   C3XWF6_BRAFL            Unreviewed;      1410 AA.
AC   C3XWF6;
DT   28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT   28-JUL-2009, sequence version 1.
DT   24-JAN-2024, entry version 92.
DE   SubName: Full=Uncharacterized protein {ECO:0000313|EMBL:EEN67690.1};
GN   ORFNames=BRAFLDRAFT_63636 {ECO:0000313|EMBL:EEN67690.1};
OS   Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC   Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes;
OC   Branchiostomatidae; Branchiostoma.
OX   NCBI_TaxID=7739;
RN   [1] {ECO:0000313|EMBL:EEN67690.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN67690.1};
RC   TISSUE=Testes {ECO:0000313|EMBL:EEN67690.1};
RX   PubMed=18563158; DOI=10.1038/nature06967;
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA   Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA   Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J.,
RA   Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J., Kapitonov V.V.,
RA   Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A.,
RA   Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T.,
RA   Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA   Satoh N., Rokhsar D.S.;
RT   "The amphioxus genome and the evolution of the chordate karyotype.";
RL   Nature 453:1064-1071(2008).
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DR   EMBL; GG666471; EEN67690.1; -; Genomic_DNA.
DR   RefSeq; XP_002611680.1; XM_002611634.1.
DR   STRING; 7739.C3XWF6; -.
DR   eggNOG; KOG3561; Eukaryota.
DR   InParanoid; C3XWF6; -.
DR   GO; GO:1990513; C:CLOCK-BMAL transcription complex; IBA:GO_Central.
DR   GO; GO:0005737; C:cytoplasm; IEA:InterPro.
DR   GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR   GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR   GO; GO:0000978; F:RNA polymerase II cis-regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR   GO; GO:0032922; P:circadian regulation of gene expression; IBA:GO_Central.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   CDD; cd00130; PAS; 2.
DR   CDD; cd11655; rap1_myb-like; 1.
DR   Gene3D; 4.10.280.10; Helix-loop-helix DNA-binding domain; 1.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   Gene3D; 3.30.450.20; PAS domain; 2.
DR   InterPro; IPR011598; bHLH_dom.
DR   InterPro; IPR047230; CLOCK-like.
DR   InterPro; IPR036638; HLH_DNA-bd_sf.
DR   InterPro; IPR009057; Homeobox-like_sf.
DR   InterPro; IPR001067; Nuc_translocat.
DR   InterPro; IPR001610; PAC.
DR   InterPro; IPR000014; PAS.
DR   InterPro; IPR035965; PAS-like_dom_sf.
DR   InterPro; IPR013767; PAS_fold.
DR   InterPro; IPR015010; Rap1_Myb_dom.
DR   PANTHER; PTHR46055; CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT; 1.
DR   PANTHER; PTHR46055:SF3; CIRCADIAN LOCOMOTER OUTPUT CYCLES PROTEIN KAPUT; 1.
DR   Pfam; PF00010; HLH; 1.
DR   Pfam; PF08914; Myb_DNA-bind_2; 1.
DR   Pfam; PF00989; PAS; 1.
DR   Pfam; PF14598; PAS_11; 1.
DR   PRINTS; PR00785; NCTRNSLOCATR.
DR   SMART; SM00353; HLH; 1.
DR   SMART; SM00086; PAC; 1.
DR   SMART; SM00091; PAS; 2.
DR   SUPFAM; SSF47459; HLH, helix-loop-helix DNA-binding domain; 1.
DR   SUPFAM; SSF46689; Homeodomain-like; 1.
DR   SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 2.
DR   PROSITE; PS50888; BHLH; 1.
DR   PROSITE; PS50112; PAS; 1.
PE   4: Predicted;
KW   Activator {ECO:0000256|ARBA:ARBA00023159};
KW   Biological rhythms {ECO:0000256|ARBA:ARBA00023108};
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   DOMAIN          586..636
FT                   /note="BHLH"
FT                   /evidence="ECO:0000259|PROSITE:PS50888"
FT   DOMAIN          659..715
FT                   /note="PAS"
FT                   /evidence="ECO:0000259|PROSITE:PS50112"
FT   REGION          140..327
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          348..411
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          969..1013
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1030..1073
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1315..1344
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1364..1384
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          1127..1154
FT                   /evidence="ECO:0000256|SAM:Coils"
FT   COMPBIAS        140..173
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        194..283
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        348..376
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        395..410
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1330..1344
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1410 AA;  157086 MW;  7360111E541D2B3A CRC64;
     MFLQHSFTVS VQHGGGLLTS RSRDENSIKL AEEGQSTRDC DTYSHRYILD CVEKNTLLPL
     EQYNRQKFLR SEQINILKYV AEHSDPTRPV GGNKIWKEMA LYKITKHSWH AMRDHYLKHL
     KGKEHLYQLS DRLKYSRIQF RKDASPTTDD DGDKDAPRDA EEHQSEHSNK DDSINIDMFN
     SSDEEEKESG DPTEPTEVSS AQGSSAQATS AQGSSAKMTT AQATSTQGTS AKTTSAQATS
     AQATSSQASS AQASSAQATS AKVNSAQLTS AQVDSTLAST TLRRSPLKRR GKVTPVEEKT
     QGACGRSDGA GVQKESHEVP ASSDDMDDHL AVLAVDVKKK QVKEEAILPE KRARLNPNDG
     KNGDIQDVKQ DKHQQVGSDA VQEPASAAEA QEELREEDGM LEDEPRGDEE DEDHLLTVLE
     GCVKIKELMT EFSLSLLMVT RALYYHRGDV GATRTFLRTG KKTHEKRIQR VLDFNNAANF
     IVTNLKIIDS ITRCYDEGNL HSPLKWDDES SFMYDDMEED EKDRNKSKKA CNMAMEGSHR
     VAQVYHDFRL EQSSWRKKME ESAGWVPGYL AHDMVFQTYY VSAYELERQS RNRSEKKRRD
     QFNILINELC SMVSSNNRKM DKSSVLQSTI AFLKRNKEIT AQSEANEIKE NWKPPFLTNE
     EFSQLMLDAT NGFMLAINKQ GKILYVSENV TSLLGHLPND LVGNTLGDMV HEKEKVQTCN
     LLTHHTLHLD QTESDYGHDK HLSFSCHFVR GKIDPTEEPA YECIKLSGSY RRSLSGKISS
     TCKVEKDNQK TKGGVGGSGG DEVVLVMTAK LLAPLFLKEM SVVDETKREF TSRHSLEWKF
     LFLDHRAPPI IGYLPFEVLG TSGYDYYHVD DLDRISICHE QLMQCGEGTS CCYRFLTKGQ
     QWIWLQTRYY ITYNQWNSKP EFIVCTHTVV SYSEVCNKLR QELGLSDSGD NVDMSVSFGT
     LKRSLSNSSL AVSEKSRKSQ RSSAPDRSPH GSAEMHSVQV GETTPGSVQG EDFPDITKQY
     KTLNDLLTTK TRPVSSHSSS TSVQQPSNPS QRPQPSSSHH SAPQTVPSAA QSSLAKFSQY
     RVADEISSTG TLTENDAMTT MSESVYHSPP SEMPMGALIR PPQLRLQEQL LQRHQALQDT
     IRRQQEELQL LRQQILMQCP MVTDPGVLTA MSVQQNSLPY PPSSSLPTPA MPYPPSQAAP
     MTNSMQQVPQ ASLLTSQSNM ANMPGGVFVQ GQMSSILQAP PQGGQYGAGQ VHAMGIIQGQ
     FVASQGVQPG PSSSGLASQM DNVSRFDFGQ NKTSVVTNPT SKGSLMTTAQ LLSPQVHMMP
     PPQSPTGVPA PGPAAQTSKS SRPLTVAQRL QMQQQQRLQQ ANLQSQVQQQ PQQQQQQQQQ
     QAQLAAANFP YYIHQMYQRQ DSDTHSQHSQ
//
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