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Database: UniProt
Entry: C3Y5N9_BRAFL
LinkDB: C3Y5N9_BRAFL
Original site: C3Y5N9_BRAFL 
ID   C3Y5N9_BRAFL            Unreviewed;      2907 AA.
AC   C3Y5N9;
DT   28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT   28-JUL-2009, sequence version 1.
DT   24-JAN-2024, entry version 63.
DE   RecName: Full=C2H2-type domain-containing protein {ECO:0000259|PROSITE:PS50157};
GN   ORFNames=BRAFLDRAFT_87954 {ECO:0000313|EMBL:EEN64286.1};
OS   Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC   Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes;
OC   Branchiostomatidae; Branchiostoma.
OX   NCBI_TaxID=7739;
RN   [1] {ECO:0000313|EMBL:EEN64286.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN64286.1};
RC   TISSUE=Testes {ECO:0000313|EMBL:EEN64286.1};
RX   PubMed=18563158; DOI=10.1038/nature06967;
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA   Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA   Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J.,
RA   Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J., Kapitonov V.V.,
RA   Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A.,
RA   Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T.,
RA   Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA   Satoh N., Rokhsar D.S.;
RT   "The amphioxus genome and the evolution of the chordate karyotype.";
RL   Nature 453:1064-1071(2008).
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR   EMBL; GG666487; EEN64286.1; -; Genomic_DNA.
DR   RefSeq; XP_002608276.1; XM_002608230.1.
DR   eggNOG; KOG1721; Eukaryota.
DR   InParanoid; C3Y5N9; -.
DR   GO; GO:0000981; F:DNA-binding transcription factor activity, RNA polymerase II-specific; IBA:GO_Central.
DR   GO; GO:0000977; F:RNA polymerase II transcription regulatory region sequence-specific DNA binding; IBA:GO_Central.
DR   GO; GO:0006357; P:regulation of transcription by RNA polymerase II; IBA:GO_Central.
DR   Gene3D; 3.30.160.60; Classic Zinc Finger; 27.
DR   InterPro; IPR036236; Znf_C2H2_sf.
DR   InterPro; IPR013087; Znf_C2H2_type.
DR   PANTHER; PTHR24392:SF31; C2H2-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR24392; ZINC FINGER PROTEIN; 1.
DR   SMART; SM00355; ZnF_C2H2; 64.
DR   SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 22.
DR   PROSITE; PS00028; ZINC_FINGER_C2H2_1; 10.
DR   PROSITE; PS50157; ZINC_FINGER_C2H2_2; 30.
PE   4: Predicted;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU00042}.
FT   DOMAIN          13..40
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          41..68
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          348..370
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          374..401
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          402..427
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          478..505
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          506..533
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          656..683
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          684..714
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          715..742
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          836..863
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          864..891
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          894..921
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          1026..1053
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          1054..1081
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          1276..1303
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          1304..1331
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          1495..1522
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          1523..1550
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          1696..1718
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          1724..1751
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          1752..1779
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          1834..1861
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          2354..2382
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          2398..2425
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          2466..2493
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          2494..2521
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          2543..2570
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          2827..2849
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   DOMAIN          2875..2902
FT                   /note="C2H2-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50157"
FT   REGION          79..107
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          223..271
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          560..617
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          950..995
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1149..1219
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          1940..2070
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          2281..2344
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        224..260
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        562..583
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1167..1189
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1194..1212
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1959..1980
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1981..1996
FT                   /note="Acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        2002..2022
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        2055..2070
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        2283..2304
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        2313..2327
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   2907 AA;  334623 MW;  8A54D5B6F5D07080 CRC64;
     MMESPVESNK PQLKCGECDR TFSSKDQLDS HYSTHTWKQC FQCNFCSYTT TSINQIKQHA
     ETHRGQKSAN TTVEQELIGG NSDHEETKET SDECAAQSPN AEGDKEAVIV IDSDDDHEDE
     DRQNRHDVQN TSNLLAIQRY IEGATGKEAQ NEESIANSKS STLSCANAAP LEAALTLDAK
     SDQNLPQETV ERNIATGYKD SSQQSRNIFA QLMGDFPVAT LQPSSPMVDC STSTGTERQQ
     SQTSSSTSHG GTNPVASGSR EETTADPGAD IQCEVVSSSN SARKKKRNKK AKKLWTCECG
     LSTYYLDNLR RHLRKGSCSQ QKHNVYRARP TMATTGAVVK KTARQVRFEC SRCSFWSATR
     SELVKHQKTH VRTHFCSECP FQTNHTAKLR RHMQMHEGDH LFTCTECSFS SDHRNILTRH
     KKLHEAEICN PGVSQKTFKS LPNEPDLELV CSMCPFTTRE GKYYLLEHEA EHYEDKRMRC
     DQCDLTTLDK RNFQSHLWSH DGQKPFECAH CPYRTAHAKS LDRHQRNHNA DLPFQCHLCS
     FSAKGQSALS AHMNVHGMNS RFDQKKSGES ESSRRKQGES EEGEEDCLST SETNDSFEAT
     ELEIPPEQLD SRKGAVEEKE SHVDGEYFNC KHCAFSAKDR YVLLLHAAKH YSDMTYRCDQ
     CDFRSRHSVS LKEHLFIHLG QKPYVCTKDP KCPFVSAHQG NMRSHMKSHS ANLPFKCRFC
     TFSTVRQSVL TKHQRLHWLA RQKSGQETKS RPPKRTVYKC KHCEHTAQSQ HALMCHQAEH
     KNLRVFQCNR CQFFTNSRFI FRTHRSKHLS RDKVGMKHGD RGKKVQVEPS VQQKPFNCST
     CSYTTDKKHL LLVHQAKHSG DKAFHCDECD FSTLTVENLI QHLRTHERRK VQKYKCDECP
     YIAERQRALI NHKNNHKADL PFKCKYCSYT ATRGYYIRVH MLLHIHSKTD RSETEDGRGH
     SESIPNTSTD VSDPAILHHD ANSDGKVTSE KASKSVPGIR LVMTGSGQYR TTEPASQPPK
     PASKMIYCEY CDHSTTRPRD MKVHVRLHTG ERPYACPDCP FRAIQSHHLQ KHQKYHQANL
     AQKCRLCTFS CRSASLLRSH VQLHNDKRKW HRCPHCNFVT SSYRVVHTHI KKQHVLSSSL
     TGAASVLPVK EKSPSPQPGE VSEVSVEGSE SAEEEYQGAE EEDVDVVGLE EEAGQTQDLD
     RSLEKHEEDG DSADNSEDQA EVLCVPHEKD TDRQPPGTIR NTGGLEEVKC NHCEFLSASH
     VDHLIHLSTH NNNKKICCDQ CDYTTSNESL FKHHWQTHTS ENLFKCDLCP YRGTGRANLL
     QHQSFHSAKQ SLKCRWCSFS CSERLHLDNH SRLHGQGRFK YKCQYCHFNT DKVFLHLVHK
     AKHSSTGIIK CNMCKSFQTK DTDALKEHLK KHTHQEYPSK NLSFLQRYKS KVYAEDDLYG
     CKLCPYKTLQ PKSMIVHLSW HGANEVYKCP FCNFSHTRLY IIDDHKKLHG YMGSFKCNQC
     SYATDEKYRL LKHKAMHSGR KSFKCDQCDY TTDNSHRLMI HTTRHSGQKT HMCPLCPFET
     MSKTDLKVHK QKHGAKHSQK CKYCTYSCEN KKHLSKHLKL HEDKTDLRCL KCDFVATSEC
     SLSWHEANHH KDDDVQPDES VVTKEAVNDA PVSSVKSKLL STWRYQRKKC PQCPFIAQDL
     NRLQDHVQKH GAALPFKCTQ CSYTCERETD LTQHSRCHGV KGAFVCQECS YSTEKKLGLL
     LHQVTHTSDG MYSCDQCDLK TPDKEALLSH MKEHDGTQVF RCSVCPYSTV IESYYVLHQR
     RHHVRLPLSC KYCSYSAGKK KDIEQHTRMH KRKFHCRECT YTTDSRYHFL VHRGLHTEQK
     IFSCDKCPFH TKAMVALRNH LLNQCNNKKL KCSECPFVVD RREVLMNHMK YHNVNLRYKC
     DHCSFSTALG WHFNRHAKLH KKSTGQRQKP SASSTEQQDS SRDNEERKKK PSLVESDHDS
     DVEVVDSDEN DSTDQVETPE QDMMNDDGHE ADNSRSTDET GDVTEDVDVT EDVTGDVTGD
     VTGDGNCESS KEKVMDVSGP STSVTTSTHQ PTAKQQTVFN LVKSYASYHL SCRFCPYKTS
     KRIHLVSHEA KHGADLPFKC SKCSYSDRFE GKMAIHMRVH GCPGRYQCSQ CYYSTNNEGF
     LQVHMSSRHR TSKVFHCSKC DFSTERPKYL KEHIYKQHLC KSPPTKVKAL QYKCIRCSFQ
     AATLADLWEH HKVQHKEEEK HFYKDASVYK CRHCSFVAPK QHRMARHIRI HLRDLAYTRQ
     PTDKVAKASS SGTNKVTWTD GQKVGSDEDS QEVPPVGYQS SAPNCDVSDE KSVKKSKNTA
     RKSVPLWNKE RPAYQCPDCD YTATREHQVL AHAQNIHRKE PEVERQKVAH YPRRFKLFKC
     HSCPYTSYRH VHVSIHEKYH SANYPFKCDQ CTYTCQFLYK LLQHKELHER GDSVSPPPMP
     RNITVYKCPL CPYTSYKRTV VQEHKTYHKA DYPHKCSDCS YSCKTDAKLQ DHMKLHTQDG
     SADQAQEEPA MSQVSHRGQA SLFKCSMCPY RSYQRTHIYC HERLHYANLP NKCCYCSYSS
     LFEYKVQQHQ KLHEVEDGSA RLSDNDASQD AIFSIMESST HEYDEDLTAA AHNADEELQT
     EGILSRKRGL NAVFDNSDRY PLRAEGRLSI RLFRCAKCHF YSKSWRLLQL HKAQHELKMI
     RSDSRKRSLP AAQPDREAEG GMYRCRYCPY GSTHISHVWR HEERHNAGLP FKCRYCSYSS
     LLEFWTDRHE AVHKEERQVE AMQDIRDLQI QPEERSPVFA YGDDKLFAGI DTEEELATNS
     DGSDDAYSCR LCGRTFEEWR TYQQHARQHR QAGGEHVSHA VALGDPFTGR VFYVFTCKLC
     GRRFTGQVDW IQHMQHHRRN NRVPDRR
//
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