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Database: UniProt
Entry: C3YPY1_BRAFL
LinkDB: C3YPY1_BRAFL
Original site: C3YPY1_BRAFL 
ID   C3YPY1_BRAFL            Unreviewed;       619 AA.
AC   C3YPY1;
DT   28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT   28-JUL-2009, sequence version 1.
DT   27-MAR-2024, entry version 75.
DE   SubName: Full=Glial fibrillary acidic protein-like isoform X3 {ECO:0000313|RefSeq:XP_035666298.1, ECO:0000313|RefSeq:XP_035666299.1};
GN   Name=LOC118409400 {ECO:0000313|RefSeq:XP_035666298.1,
GN   ECO:0000313|RefSeq:XP_035666299.1};
GN   ORFNames=BRAFLDRAFT_124339 {ECO:0000313|EMBL:EEN57619.1};
OS   Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC   Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes;
OC   Branchiostomatidae; Branchiostoma.
OX   NCBI_TaxID=7739;
RN   [1] {ECO:0000313|EMBL:EEN57619.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN57619.1};
RC   TISSUE=Testes {ECO:0000313|EMBL:EEN57619.1};
RX   PubMed=18563158; DOI=10.1038/nature06967;
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA   Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA   Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J.,
RA   Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J., Kapitonov V.V.,
RA   Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A.,
RA   Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T.,
RA   Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA   Satoh N., Rokhsar D.S.;
RT   "The amphioxus genome and the evolution of the chordate karyotype.";
RL   Nature 453:1064-1071(2008).
RN   [2] {ECO:0000313|RefSeq:XP_035666298.1, ECO:0000313|RefSeq:XP_035666299.1}
RP   IDENTIFICATION.
RC   STRAIN=S238N-H82 {ECO:0000313|RefSeq:XP_035666298.1,
RC   ECO:0000313|RefSeq:XP_035666299.1};
RC   TISSUE=Testes {ECO:0000313|RefSeq:XP_035666298.1,
RC   ECO:0000313|RefSeq:XP_035666299.1};
RG   RefSeq;
RL   Submitted (NOV-2023) to UniProtKB.
CC   -!- SIMILARITY: Belongs to the intermediate filament family.
CC       {ECO:0000256|RuleBase:RU000685}.
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DR   EMBL; GG666539; EEN57619.1; -; Genomic_DNA.
DR   RefSeq; XP_002601607.1; XM_002601561.1.
DR   RefSeq; XP_035666298.1; XM_035810405.1.
DR   RefSeq; XP_035666299.1; XM_035810406.1.
DR   STRING; 7739.C3YPY1; -.
DR   eggNOG; KOG0977; Eukaryota.
DR   InParanoid; C3YPY1; -.
DR   OMA; IDMYESR; -.
DR   Proteomes; UP000001554; Chromosome 2.
DR   GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR   GO; GO:0005882; C:intermediate filament; IBA:GO_Central.
DR   GO; GO:0030246; F:carbohydrate binding; IEA:UniProtKB-KW.
DR   GO; GO:0005200; F:structural constituent of cytoskeleton; IBA:GO_Central.
DR   GO; GO:0045109; P:intermediate filament organization; IBA:GO_Central.
DR   CDD; cd00161; RICIN; 1.
DR   Gene3D; 1.20.5.170; -; 1.
DR   Gene3D; 2.80.10.50; -; 1.
DR   Gene3D; 1.20.5.500; Single helix bin; 1.
DR   Gene3D; 1.20.5.1160; Vasodilator-stimulated phosphoprotein; 1.
DR   InterPro; IPR018039; IF_conserved.
DR   InterPro; IPR039008; IF_rod_dom.
DR   InterPro; IPR002957; Keratin_I.
DR   InterPro; IPR035992; Ricin_B-like_lectins.
DR   InterPro; IPR000772; Ricin_B_lectin.
DR   PANTHER; PTHR45652; GLIAL FIBRILLARY ACIDIC PROTEIN; 1.
DR   PANTHER; PTHR45652:SF17; IF ROD DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF00038; Filament; 1.
DR   PRINTS; PR01248; TYPE1KERATIN.
DR   SMART; SM01391; Filament; 1.
DR   SMART; SM00458; RICIN; 1.
DR   SUPFAM; SSF64593; Intermediate filament protein, coiled coil region; 2.
DR   SUPFAM; SSF50370; Ricin B-like lectins; 1.
DR   PROSITE; PS00226; IF_ROD_1; 1.
DR   PROSITE; PS51842; IF_ROD_2; 1.
DR   PROSITE; PS50231; RICIN_B_LECTIN; 1.
PE   3: Inferred from homology;
KW   Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW   Intermediate filament {ECO:0000256|ARBA:ARBA00022754,
KW   ECO:0000256|RuleBase:RU000685};
KW   Reference proteome {ECO:0000313|Proteomes:UP000001554}.
FT   DOMAIN          133..446
FT                   /note="IF rod"
FT                   /evidence="ECO:0000259|PROSITE:PS51842"
FT   REGION          1..43
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          72..93
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COILED          130..424
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   619 AA;  69987 MW;  840031D09F89258B CRC64;
     MSRSGTQSTT TLSHTVPVQR PGPRPSATST PTKTRLSGSP RSMTDSIYAA RFSTSPAMSN
     YNSATKTLTT TYRLGGGGTN NRTSFSGSRP SPVTTMRRTT IAASRPSTTT ISGAIATSNA
     LQIAENHALR VQEKEEMQTL NQRLAGYIDK VRFLETRNEE LEIEVRALQA GHQNFHQMKE
     MFEQEIRELR RAIDSLSNEK AIVEVDRDTL GEELDHTRHQ LGEEKRVRQD LETELNSSRK
     ELNKVDLARQ DMETRLKTAL QDLDFSKEIH QQEIEALQKQ LEEQKAVVQI DSGRSIYDEM
     AMAMANMKKQ YEALAKKTKD ESEQWYQSKL RDITEKCDRA EDALRLARQE ALENKRQVHV
     LTSEVDTAKS KNALLEKSAR ELESRSTGDV DQLQSMVRSL EDELKQIKNE MAKQVQDYNE
     LMNVKLALDV EIQAYRKLLE GEETRMDTSR MSYSRSRQSM IVDDLEDSKE DLKIEETGVI
     RMTVQSENIA GLLKGRTFFL SFRDSEDVLE MQNGPDGPQA VLAGKKSPRS DSQLWSYTDG
     LLVNRQNGQV LHLPEATAGG AVKVAKKTGK QDQKWIIRGD GYILSDPDEL AMDVADGKVV
     VQHKKKEGQD WDVEIYETV
//
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