ID C3YPY1_BRAFL Unreviewed; 619 AA.
AC C3YPY1;
DT 28-JUL-2009, integrated into UniProtKB/TrEMBL.
DT 28-JUL-2009, sequence version 1.
DT 27-MAR-2024, entry version 75.
DE SubName: Full=Glial fibrillary acidic protein-like isoform X3 {ECO:0000313|RefSeq:XP_035666298.1, ECO:0000313|RefSeq:XP_035666299.1};
GN Name=LOC118409400 {ECO:0000313|RefSeq:XP_035666298.1,
GN ECO:0000313|RefSeq:XP_035666299.1};
GN ORFNames=BRAFLDRAFT_124339 {ECO:0000313|EMBL:EEN57619.1};
OS Branchiostoma floridae (Florida lancelet) (Amphioxus).
OC Eukaryota; Metazoa; Chordata; Cephalochordata; Leptocardii; Amphioxiformes;
OC Branchiostomatidae; Branchiostoma.
OX NCBI_TaxID=7739;
RN [1] {ECO:0000313|EMBL:EEN57619.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=S238N-H82 {ECO:0000313|EMBL:EEN57619.1};
RC TISSUE=Testes {ECO:0000313|EMBL:EEN57619.1};
RX PubMed=18563158; DOI=10.1038/nature06967;
RG US DOE Joint Genome Institute (JGI-PGF);
RA Putnam N.H., Butts T., Ferrier D.E.K., Furlong R.F., Hellsten U.,
RA Kawashima T., Robinson-Rechavi M., Shoguchi E., Terry A., Yu J.-K.,
RA Benito-Gutierrez E.L., Dubchak I., Garcia-Fernandez J., Gibson-Brown J.J.,
RA Grigoriev I.V., Horton A.C., de Jong P.J., Jurka J., Kapitonov V.V.,
RA Kohara Y., Kuroki Y., Lindquist E., Lucas S., Osoegawa K., Pennacchio L.A.,
RA Salamov A.A., Satou Y., Sauka-Spengler T., Schmutz J., Shin-I T.,
RA Toyoda A., Bronner-Fraser M., Fujiyama A., Holland L.Z., Holland P.W.H.,
RA Satoh N., Rokhsar D.S.;
RT "The amphioxus genome and the evolution of the chordate karyotype.";
RL Nature 453:1064-1071(2008).
RN [2] {ECO:0000313|RefSeq:XP_035666298.1, ECO:0000313|RefSeq:XP_035666299.1}
RP IDENTIFICATION.
RC STRAIN=S238N-H82 {ECO:0000313|RefSeq:XP_035666298.1,
RC ECO:0000313|RefSeq:XP_035666299.1};
RC TISSUE=Testes {ECO:0000313|RefSeq:XP_035666298.1,
RC ECO:0000313|RefSeq:XP_035666299.1};
RG RefSeq;
RL Submitted (NOV-2023) to UniProtKB.
CC -!- SIMILARITY: Belongs to the intermediate filament family.
CC {ECO:0000256|RuleBase:RU000685}.
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DR EMBL; GG666539; EEN57619.1; -; Genomic_DNA.
DR RefSeq; XP_002601607.1; XM_002601561.1.
DR RefSeq; XP_035666298.1; XM_035810405.1.
DR RefSeq; XP_035666299.1; XM_035810406.1.
DR STRING; 7739.C3YPY1; -.
DR eggNOG; KOG0977; Eukaryota.
DR InParanoid; C3YPY1; -.
DR OMA; IDMYESR; -.
DR Proteomes; UP000001554; Chromosome 2.
DR GO; GO:0005737; C:cytoplasm; IBA:GO_Central.
DR GO; GO:0005882; C:intermediate filament; IBA:GO_Central.
DR GO; GO:0030246; F:carbohydrate binding; IEA:UniProtKB-KW.
DR GO; GO:0005200; F:structural constituent of cytoskeleton; IBA:GO_Central.
DR GO; GO:0045109; P:intermediate filament organization; IBA:GO_Central.
DR CDD; cd00161; RICIN; 1.
DR Gene3D; 1.20.5.170; -; 1.
DR Gene3D; 2.80.10.50; -; 1.
DR Gene3D; 1.20.5.500; Single helix bin; 1.
DR Gene3D; 1.20.5.1160; Vasodilator-stimulated phosphoprotein; 1.
DR InterPro; IPR018039; IF_conserved.
DR InterPro; IPR039008; IF_rod_dom.
DR InterPro; IPR002957; Keratin_I.
DR InterPro; IPR035992; Ricin_B-like_lectins.
DR InterPro; IPR000772; Ricin_B_lectin.
DR PANTHER; PTHR45652; GLIAL FIBRILLARY ACIDIC PROTEIN; 1.
DR PANTHER; PTHR45652:SF17; IF ROD DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF00038; Filament; 1.
DR PRINTS; PR01248; TYPE1KERATIN.
DR SMART; SM01391; Filament; 1.
DR SMART; SM00458; RICIN; 1.
DR SUPFAM; SSF64593; Intermediate filament protein, coiled coil region; 2.
DR SUPFAM; SSF50370; Ricin B-like lectins; 1.
DR PROSITE; PS00226; IF_ROD_1; 1.
DR PROSITE; PS51842; IF_ROD_2; 1.
DR PROSITE; PS50231; RICIN_B_LECTIN; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Intermediate filament {ECO:0000256|ARBA:ARBA00022754,
KW ECO:0000256|RuleBase:RU000685};
KW Reference proteome {ECO:0000313|Proteomes:UP000001554}.
FT DOMAIN 133..446
FT /note="IF rod"
FT /evidence="ECO:0000259|PROSITE:PS51842"
FT REGION 1..43
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 72..93
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 130..424
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 619 AA; 69987 MW; 840031D09F89258B CRC64;
MSRSGTQSTT TLSHTVPVQR PGPRPSATST PTKTRLSGSP RSMTDSIYAA RFSTSPAMSN
YNSATKTLTT TYRLGGGGTN NRTSFSGSRP SPVTTMRRTT IAASRPSTTT ISGAIATSNA
LQIAENHALR VQEKEEMQTL NQRLAGYIDK VRFLETRNEE LEIEVRALQA GHQNFHQMKE
MFEQEIRELR RAIDSLSNEK AIVEVDRDTL GEELDHTRHQ LGEEKRVRQD LETELNSSRK
ELNKVDLARQ DMETRLKTAL QDLDFSKEIH QQEIEALQKQ LEEQKAVVQI DSGRSIYDEM
AMAMANMKKQ YEALAKKTKD ESEQWYQSKL RDITEKCDRA EDALRLARQE ALENKRQVHV
LTSEVDTAKS KNALLEKSAR ELESRSTGDV DQLQSMVRSL EDELKQIKNE MAKQVQDYNE
LMNVKLALDV EIQAYRKLLE GEETRMDTSR MSYSRSRQSM IVDDLEDSKE DLKIEETGVI
RMTVQSENIA GLLKGRTFFL SFRDSEDVLE MQNGPDGPQA VLAGKKSPRS DSQLWSYTDG
LLVNRQNGQV LHLPEATAGG AVKVAKKTGK QDQKWIIRGD GYILSDPDEL AMDVADGKVV
VQHKKKEGQD WDVEIYETV
//